CX295190

Overview
NameCX295190
Unique NameCX295190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295190 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 3 
Query:  468 QVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRN 650
            +V+YYFRKPC+NDIVIFKSPPVLQEVGYTD DVFIKR+VAKEGD+VEV  GKL+VNGV RN
Sbjct:  157 KVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARN 217
[Close]
BLAST of CX295190 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 3 
Query:  468 QVTYYFRKPCSNDIVIFKSPPVL---QEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVR 647
            +V+Y+FRKP  +DIVIFK+PP+L    E GY+ +DVFIKR+VA EGD VEVR+GKL VN +V+
Sbjct:  199 KVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQ 261
[Close]
BLAST of CX295190 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.189e-14
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 3 
Query:  468 QVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVR 647
            +V+Y+FRKP  +DIVIFK+PP+L E GY+  DVFIKR+VA EGD VEV +GKL+VN  V+
Sbjct:  229 KVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQ 288
The following BLAST results are available for this feature:
BLAST of CX295190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PLSP1_ARATH9.889e-2483.61Chloroplast processing peptidase OS=Arabidopsis th... [more]
TPP1_ARATH1.096e-1461.90Thylakoidal processing peptidase 1, chloroplastic ... [more]
TPP2_ARATH3.189e-1463.33Probable thylakoidal processing peptidase 2, chlor... [more]
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Properties
Property NameValue
Genbank descriptionC05069E08SK PhIFruit1 Citrus clementina cDNA clone C05069E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295190 ID=CX295190; Name=CX295190; organism=Citrus clementina; type=EST; length=650bp
GCCTTGTGTTTTTGGGGTCGGGAACTAGAGAAGGATGCATCTCCGAATAT
ACAAGTGATGTACTGATTTGTGGCTCATTTATTCTGCTCATTTGACAATT
GAATTTGGAGCTTCATAGGTGCTGATGTAATTTGTTGATGTCTGAAACAA
TGGCATTATGGCAAGGCAGAATGACTAGTTGAGAAGGACGAAGCTACTGA
CCAGAAAGATACTACTTGATGATTTGTCTCAAGTAGAACTTTATCCTCTT
AATTAGATATTCGTTACCGATTTCATCCTCTCTCTTTGTATCTTTTGAGT
GTTCCTGTTTCAAACAATTCAGTTTCTCCACTTAGATTTTGATTTGTTTG
GGCAACATCTGTGCTTAGGGTTTATGTGGTCACTGTAGCTATTTATTTTG
CTTCAAATATAAAGAACTTGGTGAGGGCTTTAATTATTGTGCATCATAGG
TTTTTACTTAAATTTGTCAGGTTACCTACTATTTCAGAAAGCCATGCTCA
AATGATATAGTAATTTTCAAAAGTCCACCGGTTCTTCAGGAAGTAGGATA
CACTGATGATGATGTCTTTATTAAACGAGTTGTTGCCAAGGAAGGCGATG
TTGTAGAGGTTCGTGAAGGGAAACTTATAGTTAATGGAGTTGTAAGAAAT
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