CX295191

Overview
NameCX295191
Unique NameCX295191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_SCHPO (Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe GN=esf2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  353 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEER 676
            R R+GG +   + EGW+EF  K VAK VA +LN  QIGGKK S ++ D+WN+KYL KFKW  LT +IA +NA RE RL +E+   +++   Y+  VE ++ +  I ++
Sbjct:  164 RLRNGGNKRVMYEEGWIEFESKRVAKSVAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENAKMIEGIRKK 271          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_CANAL (Pre-rRNA-processing protein ESF2 OS=Candida albicans GN=ESF2 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  347 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEERLK 676
            R + GG + + F+EGW+EF  K  AK  A  LNG ++GGKK S +Y D+ NIKYL  FKW DLT +IA +N VR+ +LA+E+S  ++    ++S VEKS+ +++I+++ K
Sbjct:  166 RVKYGGNKKKNFTEGWIEFVNKSDAKLCAATLNGNKLGGKKTSYYYDDIINIKYLPGFKWLDLTQQIAKENEVRQAKLAMEISQQQKLNKSFVSNVEKSKMIANIQKKRK 275          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ABT1_MOUSE (Activator of basal transcription 1 OS=Mus musculus GN=Abt1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  377 RDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSR 670
            + G    + ++EGWVEF  K VAKRVA  L+   +G +KRS F YDLWN+KYL +F W  L+  +A++  VR QRL  E++ AKRE DFYL  VE+ +
Sbjct:   99 KKGAKYSKDYTEGWVEFRDKRVAKRVAASLHNTPMGARKRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLRNVEQGQ 196          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ABT1_RAT (Activator of basal transcription 1 OS=Rattus norvegicus GN=Abt1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  377 RDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSR 670
            + G    + ++EGWVEF  K +AKRVA  L+   +G +KRS F YDLWN+KYL +F W  L+  +A++  VR QRL  E++ AKRE DFYL  VE+ +
Sbjct:   98 KKGAKYSKDYTEGWVEFRDKRIAKRVAASLHNTPMGARKRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLRNVEQGQ 195          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_PICST (Pre-rRNA-processing protein ESF2 OS=Pichia stipitis GN=ESF2 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  344 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEERLKK 676
            R + GG + + F+EGWVEF  K  AK  A+ LN  ++GG+K S +Y D+ N+KYLS FKW DLT +IA +N VR+ +L+LELS  ++    +++ VEKS+ +S+I+ + K+
Sbjct:  188 RVKYGGNKKKNFTEGWVEFVNKKDAKMCASTLNANKLGGRKTSYYYDDVINMKYLSGFKWFDLTQQIAKENEVRQAKLSLELSQQQKLNKTFVNNVEKSKLVSTIQRKRKE 298          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_GIBZE (Pre-rRNA-processing protein ESF2 OS=Gibberella zeae GN=ESF2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  347 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEERLK 676
            R R GG + + ++EGWVEFTKK  AK V ++LN   IGGKK S ++ DLWN+ YL  FKW +LT +IA +NA R  R+  E+S + +E   ++  VEK++ L  +  + K
Sbjct:  160 RVRAGGNKKRSYTEGWVEFTKKKDAKAVCDLLNARTIGGKKGSYYHDDLWNLLYLKGFKWHNLTEQIAAENAERSSRMRAEISKSTKENKEFVRNVEKAKMLDGMAVKAK 269          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_YARLI (Pre-rRNA-processing protein ESF2 OS=Yarrowia lipolytica GN=ESF2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  353 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEER 676
            R R GG +   ++EGW EFTKK  AK  A+ LNG  IGGKK S  Y D+ N KYL KFKW DL+ ++A +   R+ RL  E+S A RE   Y+  +EKS+A     +R
Sbjct:  168 RIRHGGNRALAYTEGWAEFTKKRYAKTCASTLNGNTIGGKKGSQHYDDIMNAKYLPKFKWSDLSEQLAQETHNRQARLRTEISQATRENQTYIQSLEKSKAAERRRQR 275          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ESF2_DEBHA (Pre-rRNA-processing protein ESF2 OS=Debaryomyces hansenii GN=ESF2 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 49/117 (41.88%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  326 RKRDGGFQDQGFSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSRALSSIEERLKKVCADFG 676
            R + GG + + ++ GWVEF  K  AK  A  LNG ++GGKK S +Y D+ NIKYLS FKW DLT +IA +N +R+ +L++ELS  ++    +++ VEKS+ +++++ + K   A+ G
Sbjct:  138 RVKYGGNKKKNYTAGWVEFINKKDAKLCAGTLNGNKLGGKKSSYYYDDIINIKYLSAFKWFDLTQQIAKENEIRQAKLSMELSQQQKLNKSFINNVEKSKMINNMQNKRKARQAESG 254          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ABT1_PONAB (Activator of basal transcription 1 OS=Pongo abelii GN=ABT1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  377 FSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSR 643
            ++EGWVEF  K +AKRVA  L+   +G ++RS F YDLWN+KYL +F W  L+  +A++  VR QRL  E++ AKRE DFYL  VE+ +
Sbjct:  105 YTEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLQSVERGQ 193          
BLAST of CX295191 vs. ExPASy Swiss-Prot
Match: ABT1_HUMAN (Activator of basal transcription 1 OS=Homo sapiens GN=ABT1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  377 FSEGWVEFTKKGVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALELSAAKRERDFYLSKVEKSR 643
            ++EGWVEF  K +AKRVA  L+   +G ++RS F YDLWN+KYL +F W  L+  +A++  VR QRL  E++ AKRE DFYL  VE+ +
Sbjct:  105 YTEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLQSVERGQ 193          
The following BLAST results are available for this feature:
BLAST of CX295191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ESF2_SCHPO2.869e-2245.37Pre-rRNA-processing protein esf2 OS=Schizosaccharo... [more]
ESF2_CANAL8.347e-2245.45Pre-rRNA-processing protein ESF2 OS=Candida albica... [more]
ABT1_MOUSE1.424e-2148.98Activator of basal transcription 1 OS=Mus musculus... [more]
ABT1_RAT1.859e-2147.96Activator of basal transcription 1 OS=Rattus norve... [more]
ESF2_PICST2.429e-2145.05Pre-rRNA-processing protein ESF2 OS=Pichia stipiti... [more]
ESF2_GIBZE4.142e-2144.55Pre-rRNA-processing protein ESF2 OS=Gibberella zea... [more]
ESF2_YARLI5.410e-2147.22Pre-rRNA-processing protein ESF2 OS=Yarrowia lipol... [more]
ESF2_DEBHA5.410e-2141.88Pre-rRNA-processing protein ESF2 OS=Debaryomyces h... [more]
ABT1_PONAB5.410e-2150.56Activator of basal transcription 1 OS=Pongo abelii... [more]
ABT1_HUMAN5.410e-2150.56Activator of basal transcription 1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC05069E09SK PhIFruit1 Citrus clementina cDNA clone C05069E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295191 ID=CX295191; Name=CX295191; organism=Citrus clementina; type=EST; length=711bp
GGTTTTTTTTTTTTTTTTGAGAAAAGACGGAGAATTAACATCAAACAATT
TTTCACCAATTTTGCACATGGACATATTAATCAGTGTTATCATTTTACAA
GATTATCACTTGTCTACAATATATACATCTATACAGACTTGCTCAAAGAA
TGACCACATGAAGATGCCGCGAATATCACTTGTTAGCAAGAAGTCCATCA
GCATCCCCAAGCAGGCAAGACTTCACCAGGTATAGTCATTGGTAGATTTG
CATCAATGCTAGAGTACTCCTCAGTTATTATAAACTTTAAATTTCTGTGA
TAAGACACACAAAATTGAATATTCCTCCAAAATCAGCACACACCTTCTTT
AATCGTTCTTCTATAGAACTCAATGCACGGGACTTTTCAACTTTAGAAAG
ATAGAAATCTCGCTCCCTCTTTGCAGCAGAAAGTTCTAAGGCTAGTCTCT
GCTCTCGAACGGCATTCTTGTACGCAATTTCTGCAGTAAGATCGTCCCAT
TTGAATTTACTTAGATACTTGATATTCCAAAGATCATAATAAAATGAGGA
CCTTTTCTTTCCACCAATTTGTTCACCATTTAGCATATTAGCAACCCTCT
TTGCAACACCTTTCTTGGTGAACTCAACCCACCCTTCTGAAAATCCTTGA
TCTTGAAACCCACCATCTCGCTTACGATTTTCTCATTTACGAAGTACTCT
GGATGAAGGAT
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