CX295195

Overview
NameCX295195
Unique NameCX295195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:60..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.422e-37
Identity = 77/152 (50.66%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVS-HGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            GG   + G     G  D G   D G L  II +  F+ LL +RND RC A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYCY+++++                     RGPIQL+W  NY  C
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC 214          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.060e-35
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGS-DXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            G +A  CGSG       TG      ++G++I+R MF D+L +RN+  C  +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q S G+                  RGPIQ+++  NY
Sbjct:   45 GNTADYCGSGCQSQCSSTG------DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNY 188          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.204e-34
Identity = 75/155 (48.39%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +   CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     D                  RGPIQ++   NY  C
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC 201          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.683e-34
Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +   CG G  C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +                  RGPIQ++W  NY +C
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC 201          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.576e-34
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   69 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G  + CG    G     G+L  IISR  F+D+L +RND  C ARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +  S+                  RGP+QL+W  NY +C
Sbjct:   55 GCQSQCGGTPPG---PTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC 197          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.576e-34
Identity = 75/160 (46.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTD-------GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +   CG G  C  +  G  T        GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     D                  RGPIQ++   NY  C
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC 206          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.977e-34
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYC++R+ +  +                  RGPIQ++W  NY +C
Sbjct:   45 GSTSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC 193          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.739e-33
Identity = 70/152 (46.05%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +   CG    C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +                  RGPIQ++W  NY +C
Sbjct:   51 GSTTDYCGKD--CQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC 200          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.966e-33
Identity = 72/156 (46.15%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   48 GGSAQNCGSGAVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            G +   CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+  +  D                  RGPIQ++   NY  C
Sbjct:   51 GNTNDYCGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC 205          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.966e-33
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  132 KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNYLRC 500
            KIISR MF+ +L +RN+  C A+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYC++++ +  S+                  RGP+QL+W  NY  C
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC 128          
The following BLAST results are available for this feature:
BLAST of CX295195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CHI6_POPTR4.422e-3750.66Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI7.060e-3550.67Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_TOBAC1.204e-3448.39Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_PHAVU2.683e-3446.71Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_BRANA4.576e-3448.63Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC4.576e-3446.88Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_PEA5.977e-3445.39Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI5_PHAVU1.739e-3346.05Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIT_SOLTU2.966e-3346.15Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIT_CARPA2.966e-3351.20Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05069F04SK PhIFruit1 Citrus clementina cDNA clone C05069F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295195 ID=CX295195; Name=CX295195; organism=Citrus clementina; type=EST; length=500bp
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGG
GTCCGACTACTGATATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACT
ATGGCCGAGGTCCAATTCAACTCACTTGGAAATGCAATTACTTAAGGTGC
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