CX295277

Overview
NameCX295277
Unique NameCX295277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 105/208 (50.48%), Postives = 131/208 (62.98%), Query Frame = 3
Query:  105 ASSLALKRLVSFNLI--PRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADV 704
            +S+LAL+RL+S + +  PRALR  V P A S SR FNTNA R Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +PK+KE+ER ++
Sbjct:    4 SSALALRRLLSSSTVAVPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNI 204          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 102/209 (48.80%), Postives = 125/209 (59.81%), Query Frame = 3
Query:  102 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV----RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADV 704
            MAS+LALKRL+S ++ PR+ R  + P+ +S  R FNTNAVR Y                                    TRS+SQVLN MDQ  E+P  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +PK+KE+ER DV
Sbjct:    1 MASALALKRLLSSSIAPRS-RSVLRPAVSS--RLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDV 204          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 102/203 (50.25%), Postives = 124/203 (61.08%), Query Frame = 3
Query:  102 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXX--SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADV 704
            MASSLALKR +S  L+  +    + P A+SASR FNTNA+RQY                                     RSLSQVLN +D +T++P  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVPK+KEEER +V
Sbjct:    1 MASSLALKRFLSSGLLSSSF---LRPVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNV 196          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.512e-38
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 3
Query:  423 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADV 704
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VPK+KEEER DV
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDV 205          

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-38
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  102 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQY 230
            MASSL  KR +S +L+ R+L   + P+A+++ R F+TNA+RQY
Sbjct:    1 MASSLIAKRFLSSSLLSRSL---LRPAASASHRSFDTNAMRQY 40          

HSP 3 Score: 25.7942 bits (55), Expect = 2.512e-38
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  317 CV*SIFTNKEPEPGPELHGSDDGE 388
            CV SIF++ E EPG E  G   G+
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQ 95          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 87/203 (42.86%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  108 SSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVF 707
            +S+AL+RL S NL+   +   +     S SR FNTNA                                        TRS+ Q++N MDQ+ E+PF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ D IKAEMKNGVLKVTVPK+KEEE+ DVF
Sbjct:    2 ASMALRRLASRNLVSGGIFRPL-----SVSRSFNTNAQMGRVDHDHELDDRSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVF 199          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 84/216 (38.89%), Postives = 114/216 (52.78%), Query Frame = 3
Query:  102 MASSLALKRLVSFNLIPRALRCTVAPSATSA---------SRFFNTNA-VRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--RSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVF 707
            MAS +A KR+  F L+ + L  + A  A SA         SR +NT A +R++                                    +  +SL ++L+ MD +  +P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR DQIKAEMKNGVLKV VPKVKEE+R DVF
Sbjct:    1 MASIVASKRIPLFRLVEQLLAASPAQGAASALRPVAVAGGSRAYNTGAQLRRHERDESDDDSGRGYDTRRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVF 215          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 64/130 (49.23%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  345 SLSQVLNFM-DQMTESPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVF 707
            SL ++L  M D    +    GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VPK+KEEER DVF
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVF 243          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  342 RSLSQVLNFMDQMTES--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEER 695
            R++ Q+L+ MD+M E   P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+PK K E +
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERK 220          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  342 RSLSQVLNFMDQMTESPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEER 695
            RS+ Q+L+ MD++ E    F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+PK K E +
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERK 174          
BLAST of CX295277 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  342 RSLSQVLNFMDQMTESPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEER 695
            R++ Q+++ MD++ E    F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++PK K E++
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKK 234          
The following BLAST results are available for this feature:
BLAST of CX295277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS235_ARATH5.515e-4250.4823.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ARATH1.774e-4048.8023.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA3.026e-4050.25Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS22M_SOYBN2.512e-3868.09Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU7.713e-3642.86Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ3.837e-2738.8924.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ6.339e-2249.2326.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH6.140e-1740.3125.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN9.802e-1538.76Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY1.672e-1434.38Small heat shock protein, chloroplastic OS=Petunia... [more]

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Properties
Property NameValue
Genbank descriptionC05070E07SK PhIFruit1 Citrus clementina cDNA clone C05070E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295277 ID=CX295277; Name=CX295277; organism=Citrus clementina; type=EST; length=708bp
ACGAGGCCTCGTGCCGAATTCGGCACGAGGATCAGCCGCAGTCACAAAAA
GTATTTTGAAATCTCTGCATTGTTTTGTGCTTTCTTTAAGAATTCGGCTC
AATGGCGTCCTCTCTTGCTCTCAAGAGGCTTGTTTCTTTTAATCTCATCC
CCAGGGCTTTACGCTGCACCGTCGCTCCTTCTGCTACTTCGGCATCTCGG
TTCTTCAACACAAACGCTGTTCGTCAATACGATGACGGCGGAGACGACCG
TGATCTCGACATTGATCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGTG
ACGACTTCTTCTCAGATGTGTTTGATCCATTTTCACCAACAAGGAGCCTG
AGCCAGGTCCTGAACTTCATGGATCAGATGACGGAGAGCCCTTTCTTCAG
TGGCACGCGTGGTGGACTGCGCCGAGGCTGGGATGCCAAAGAAACCGATG
ACGCATTGAACCTCAGCATCGACATGCCAGGGCTGGGCAAGGAAGACGTG
AGAGTCTCTCTGGAGCAGAACACTCTGGTGATCAGAGGCGAGGGCGGAAA
AGAAGGAGAGGACGAAGAGAGCGTGCGTAGGTACACCAGCAGGATTGATT
TGCCAGAGAAGCTCTACAGGACTGATCAGATCAAGGCTGAGATGAAGAAT
GGTGTGCTGAAGGTGACGGTGCCCAAGGTGAAGGAAGAGGAGAGGGCTGA
TGTGTTCC
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