CX295278

Overview
NameCX295278
Unique NameCX295278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.202e-62
Identity = 111/126 (88.10%), Postives = 119/126 (94.44%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASD 379
            WDPTGRYVAT+VTSVHEMENGFNIWSFNGKLLYR LKDHFFQ+LWRPRPPSFL+ EKEEEIAKNLK+YSKKYEAEDQDVS+QLSEQ+REKR+ LK EWE  I+EWKRLHEEEKMERQ LRDGEASD
Sbjct:  564 WDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQYLWRPRPPSFLSKEKEEEIAKNLKRYSKKYEAEDQDVSLQLSEQDREKRKKLKEEWEAWINEWKRLHEEEKMERQKLRDGEASD 689          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.389e-57
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASD 379
            WDPTGRYVATAVTSVHEMENGF IWSFNG +LYR LKDHFFQ  WRPRPPSFLT EKEEEIAK LKKYSKKYEAEDQDVS+ LSEQ+REKR++LK EWEK + +WK LHEEEK+ RQ LRDGE SD
Sbjct:  560 WDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQWKSLHEEEKLVRQNLRDGEVSD 685          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_AEDAE (Eukaryotic translation initiation factor 3 subunit B OS=Aedes aegypti GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.620e-25
Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLRDGEASD 379
            WDPTGRYV T  +   + ++G++IWSF GK+L R    +F  FLWRPRPP+ L+ EK++EI KNLKKY  ++E++D+    + S++  EKR  L+ ++     K++SEW    EE+K  R  LR+   +D
Sbjct:  537 WDPTGRYVVTGTSGKVKEDHGYHIWSFQGKILKRVNLKNFILFLWRPRPPTLLSDEKQKEIRKNLKKYYAQFESKDRIRMTRASKELLEKRAKLREQFVEYRTKRVSEW----EEQKYRRMQLRNNIDTD 662          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_HUMAN (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 8.425e-24
Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 2
Query:    2 WDPTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASD 379
            WDPTGRYV T+V+   H+++N + +W+F G+LL +  KD F Q LWRPRPP+ L+ E+ ++I K+LKKYSK +E +D+    + S++  E+RR++  ++ K     + L+ E+K ER  LR G  +D
Sbjct:  659 WDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTD 785          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_DROGR (Eukaryotic translation initiation factor 3 subunit B OS=Drosophila grimshawi GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.100e-23
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMEN-GFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLR 361
            WDPTGRYV T V+S    E+ GFN+++  G+++ RT+  +F QFLWRPRPP+ L+ EK++EI KNLKKY   +E +D+    + S++  EKR  L+  +     K+I+EWK    ++K  RQMLR
Sbjct:  540 WDPTGRYVVTGVSSWKVKEDTGFNMYTLQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYPTFEQKDRLRLTRASKELLEKRAQLRETFMEYRNKRIAEWK----DQKSRRQMLR 660          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_DROVI (Eukaryotic translation initiation factor 3 subunit B OS=Drosophila virilis GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMEN-GFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLR 361
            WDPTGRYV T V+S    E+ GFN+++F G+++ RT+  +F QFLWRPRPP+ L+ EK++EI KNLKKY   +E +D+    + S++  EKR  L+  +     K+I+EWK    ++K  R MLR
Sbjct:  540 WDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIRRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYPVFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWK----DQKSRRVMLR 660          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_DROAN (Eukaryotic translation initiation factor 3 subunit B OS=Drosophila ananassae GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMEN-GFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLR 361
            WDPTGRYV T V+S    E+ GFN+++F G+++ RT+  +F QFLWRPRPP+ L  EK++EI KNLKKY   +E +D+    + S++  EKR  L+  +     K+I+EWK    ++K  R MLR
Sbjct:  536 WDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLAEEKQKEIKKNLKKYYAVFEQKDRLRLTRASKELLEKRAQLRETFMEYRNKRIAEWK----DQKSRRVMLR 656          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_BOMMO (Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori GN=eIF3-S9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVH-EMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQ----DVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRD 364
            WDPTGRYV T V+S+  +M+ G+ IWSF GK+L R +K+ F QF WRPRPP+ L+ ++++EI KNLKKY  ++E++D+      S +L  +  E+ +      E KI EW     E+K  R  LRD
Sbjct:  543 WDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTLLSEKQQKEIKKNLKKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEW----NEQKPRRLELRD 664          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_DROWI (Eukaryotic translation initiation factor 3 subunit B OS=Drosophila willistoni GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMEN-GFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLR 361
            WDPTGRYV T V+S    E+ GFN+++F G+++ RT+  +F QFLWRPRPP+ L+ EK+++I KNLKKY   +E +D+    + S++  EKR  L+  +     K+I+EWK    ++K  R MLR
Sbjct:  540 WDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKDIKKNLKKYYPAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWK----DQKSRRVMLR 660          
BLAST of CX295278 vs. ExPASy Swiss-Prot
Match: EIF3B_DROMO (Eukaryotic translation initiation factor 3 subunit B OS=Drosophila mojavensis GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:    2 WDPTGRYVATAVTSVHEMEN-GFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEW----EKKISEWKRLHEEEKMERQMLR 361
            WDPTGRYV T V+S    E+ GFN+++F G+++ RT+  +F QFLWRPRPP+ L+ EK++EI KNLKKY   +E +D+    + S++  EKR  L+  +     K+I+EWK    ++K  R MLR
Sbjct:  540 WDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIRRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYPIFEQKDRLRLTRASKELLEKRAQLRETFMEYRNKRIAEWK----DQKSRRIMLR 660          
The following BLAST results are available for this feature:
BLAST of CX295278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3B_TOBAC1.202e-6288.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_ARATH3.389e-5781.75Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_AEDAE7.620e-2543.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_HUMAN8.425e-2442.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DROGR1.100e-2345.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DROVI1.877e-2345.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DROAN2.451e-2345.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_BOMMO2.451e-2344.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DROWI3.201e-2344.80Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_DROMO3.201e-2345.60Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05070E08SK PhIFruit1 Citrus clementina cDNA clone C05070E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295278 ID=CX295278; Name=CX295278; organism=Citrus clementina; type=EST; length=530bp
GTGGGATCCTACTGGAAGGTATGTTGCGACTGCTGTGACTTCAGTTCATG
AGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGGAAGCTGCTCTAC
CGAACTCTGAAGGATCACTTTTTCCAGTTTCTGTGGCGACCAAGGCCACC
ATCTTTCTTGACTCCTGAAAAAGAGGAAGAAATTGCAAAGAACTTGAAGA
AATATAGCAAGAAGTACGAGGCAGAAGACCAGGATGTGTCAATGCAATTG
AGTGAACAAGAGCGTGAGAAGCGGAGGTCATTGAAGAATGAATGGGAGAA
GAAGATCAGTGAGTGGAAGAGACTGCACGAGGAAGAAAAAATGGAGAGGC
AGATGTTGAGGGACGGAGAAGCCAGTGATGAGGAAGAAGAGTACGAAGCA
AAAGAGGTAGAAGTAGAGGAGGTGCTTGATGTTACAGAGGAGGTTGAGGA
GTGACATCATAAAGCATTTTTTTTAGCTTTTTTAAGTTAAAGCCCTCTCT
TCAGATCAAACAACTTGCAGTACAGATCTC
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