CX295283

Overview
NameCX295283
Unique NameCX295283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.772e-103
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 623
            FIVQTLNVTFL YLL I++TL +LALLEIKWSGI LEEWWRNEQFWLIGGTSAHLAAV+QGLLKV+AGIEISFTLTSKSGG+DVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVG SRTIYSVIPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLWVAINPPAG+ QIGGSF FP
Sbjct:  948 FIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSGGEDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP 1145          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.267e-101
Identity = 175/198 (88.38%), Postives = 190/198 (95.96%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 623
            FIVQTLNVTFL YLL I++TL +LALLEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKV+AG+EISFTLTSKSGGDD+DDEFADLY+VKWTSLMIPPITI+MVNLIAIAVG SRTIYSV+PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLWVAINPPAG  +IGG+F FP
Sbjct:  948 FIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGVEISFTLTSKSGGDDIDDEFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGNTEIGGNFSFP 1145          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.186e-99
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 623
            FIV+TLNVTFL+YLL IT+T+ +LA+LEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGD+ DDEFADLYIVKWTSLMIPPI IMMVNLIAIAVG SRTIYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGL+AITISLLWVAINPP+  +QIGGSF FP
Sbjct:  973 FIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.186e-99
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 623
            FIV+TLNVTFL+YLL IT+T+ +LA+LEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGD+ DDEFADLYIVKWTSLMIPPI IMMVNLIAIAVG SRTIYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGL+AITISLLWVAINPP+  +QIGGSF FP
Sbjct:  973 FIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.733e-96
Identity = 169/200 (84.50%), Postives = 186/200 (93.00%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPA--GTNQIGGSFQFP 623
            FIVQTLNVTFL+YLL IT+TL +LA+LEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSK  GDDVDDEFA+LY VKWTSLMIPP+TI+M+NL+AIAVG SRTIYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLW+AI PP+    +Q+GGSF FP
Sbjct:  928 FIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 2.733e-96
Identity = 169/200 (84.50%), Postives = 186/200 (93.00%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPA--GTNQIGGSFQFP 623
            FIVQTLNVTFL+YLL IT+TL +LA+LEIKWSGI LEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSK  GDDVDDEFA+LY VKWTSLMIPP+TI+M+NL+AIAVG SRTIYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLW+AI PP+    +Q+GGSF FP
Sbjct:  928 FIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.461e-86
Identity = 154/199 (77.39%), Postives = 177/199 (88.94%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGG-DDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 623
            FIVQ+L++TFL YLL+IT+TL +L+LLEIKWSGI L EWWRNEQFW+IGGTSAH AAVLQGLLKVIAG++ISFTLTSKS   +D DDEFADLY+VKW+ LM+PP+TIMMVN+IAIAVGL+RT+YS  PQWS+LVGGVFFSFWVL HLYPFAKGLMGRRGR PTIVFVWSGL++I +SLLWV INPP+G  Q    FQFP
Sbjct:  984 FIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINPPSG-KQDYMQFQFP 1181          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.400e-84
Identity = 144/193 (74.61%), Postives = 172/193 (89.12%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGG 608
            FIVQ+L++ FLSYLL ITVTL++++LLE+KWSGI LEEWWRNEQFWLIGGTSAHLAAV+QGLLKVIAGIEISFTLTSK+ G+D DD FADLYIVKWT L I P+TI++VNL+AI +G SRTIYSVIPQW +L+GG+FFS WVL H+YPFAKGLMGRRG+ PTIV+VWSGL++IT+SLLW+ I+PP   +  GG
Sbjct:  841 FIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRNEQFWLIGGTSAHLAAVVQGLLKVIAGIEISFTLTSKASGEDEDDIFADLYIVKWTGLFIMPLTIIIVNLVAIVIGASRTIYSVIPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISPPDDVSGSGG 1033          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.032e-83
Identity = 150/203 (73.89%), Postives = 171/203 (84.24%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQI-----GGSFQFP 623
            FIV+TL+++FL YLL IT+ L  LA+LE+KWSGI LEEWWRNEQ+WLI GTS+HL AV+QG+LKVIAGIEISFTLT+KSGGDD +D +ADLYIVKW+SLMIPPI I MVN+IAI V   RTIY  +PQWS+L+GG FFSFWVLAHLYPFAKGLMGRRG+TPTIVFVW+GLIAITISLLW AINP  G         GG FQFP
Sbjct:  909 FIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSSHLYAVVQGVLKVIAGIEISFTLTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGGFQFP 1111          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.244e-81
Identity = 139/193 (72.02%), Postives = 170/193 (88.08%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGG 608
            FIV TL+ TFLSYLL IT+TL +L LLE+KWSGI LEEWWRNEQFW+IGGTSAHLAAVLQGLLKV+AGIEISFTLT+K+  +D DD FA+LY++KWTSL IPP+ ++ +N+IA+ VG+SRT+Y+ IPQ+S+L+GG FFSFWVLAH YPFAKGLMGRRGRTPTIV+VW+GLI+IT+SLLW+ I+PP  +   GG
Sbjct:  817 FIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISPPDDSVAQGG 1009          
The following BLAST results are available for this feature:
BLAST of CX295283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CSLD3_ARATH8.772e-10390.91Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ARATH1.267e-10188.38Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD2_ORYSJ1.186e-9988.89Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.186e-9988.89Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ2.733e-9684.50Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI2.733e-9684.50Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD5_ARATH7.461e-8677.39Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD1_ARATH2.400e-8474.61Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD4_ARATH2.032e-8373.89Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD5_ORYSJ3.244e-8172.02Cellulose synthase-like protein D5 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05070F01SK PhIFruit1 Citrus clementina cDNA clone C05070F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295283 ID=CX295283; Name=CX295283; organism=Citrus clementina; type=EST; length=679bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTTCATCGTCCAGACCCTCAAT
GTTACATTCCTTTCCTACCTTCTTACCATCACTGTGACTCTAAGTATACT
AGCTTTGCTTGAAATTAAATGGTCCGGCATTGAATTAGAAGAGTGGTGGA
GAAATGAACAGTTTTGGCTGATTGGAGGCACTAGTGCTCACCTTGCTGCT
GTGCTTCAAGGGCTGCTGAAAGTCATTGCTGGAATTGAAATATCTTTCAC
CTTGACATCGAAATCAGGTGGTGATGATGTGGATGATGAGTTTGCTGATC
TTTACATTGTCAAATGGACATCTCTAATGATACCGCCAATCACAATCATG
ATGGTTAACTTAATTGCAATAGCAGTCGGGTTGAGCAGAACAATTTACAG
TGTTATACCACAATGGAGTCGCTTAGTGGGTGGAGTTTTCTTCAGTTTCT
GGGTTTTGGCCCATCTCTATCCTTTCGCAAAAGGGCTTATGGGAAGAAGA
GGCAGAACACCTACCATTGTTTTTGTATGGTCAGGACTTATCGCAATCAC
CATCTCTCTCCTTTGGGTGGCAATCAATCCTCCAGCTGGTACTAACCAAA
TAGGAGGTTCATTCCAGTTCCCATAATAGGTCATTCTTCTTCTCTTCAGT
TTAATCTTTTTATTGACATTCCTTCATTT
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