CX295287

Overview
NameCX295287
Unique NameCX295287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12682 contig Ccv1_Contig12682:133..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295287 vs. ExPASy Swiss-Prot
Match: EI2BA_DICDI (Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  373 SEAKTMMELEIELKKASDSLKSWD-TTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVL 684
            S + T++ L+ EL+ A   LKS     SISL++ CD F+R+VT+ + L++ +F++ +S L+ER E+    S  +R  I+ L+  FI DG TILVHGFSRVV+ +L
Sbjct:   43 SNSTTVVGLQKELEDAVKQLKSCPYNQSISLSSVCDSFIRFVTKRTELDFPNFDTCKSNLVERGEQLSNKSSMSRTKISQLADKFIRDGVTILVHGFSRVVLGLL 147          
BLAST of CX295287 vs. ExPASy Swiss-Prot
Match: EI2BA_SCHPO (Translation initiation factor eIF-2B subunit alpha OS=Schizosaccharomyces pombe GN=tif221 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  373 SEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVL 684
            S+AKT+ E    L+  S++LK     +ISL+AGCD+F R+VTR S  +  DF   +  L+E  + F + +   R+ IA L    I DG  IL HGFSR V  VL
Sbjct:   50 SQAKTISEFMDILQNGSNTLKEGVQNNISLSAGCDIFQRFVTR-SLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIRDGSVILTHGFSRGVAAVL 152          
BLAST of CX295287 vs. ExPASy Swiss-Prot
Match: EI2BA_YEAST (Translation initiation factor eIF-2B subunit alpha OS=Saccharomyces cerevisiae GN=GCN3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  382 KTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVL 684
            +T  E+   +K +++ L      S+SL AGCD+FMR+V R   L Y D+ + +  LIE  + F   + K+R  IA +  DFI D   ILVHG+SR V  +L
Sbjct:   40 ETAAEMINTIKSSTEELIKSIPNSVSLRAGCDIFMRFVLRNLHL-YGDWENCKQHLIENGQLFVSRAKKSRNKIAEIGVDFIADDDIILVHGYSRAVFSLL 139          
BLAST of CX295287 vs. ExPASy Swiss-Prot
Match: EI2BA_MACFA (Translation initiation factor eIF-2B subunit alpha OS=Macaca fascicularis GN=EIF2B1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  283 VIDEFNNWRKQ-PDXXXXXXXXXXXXXXXXNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLK 687
            +I+ F +  K+ PD                  + +T+  L   L  A ++L   D+ S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG TIL H +SRVV+ VL+
Sbjct:    6 LIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLE 139          
BLAST of CX295287 vs. ExPASy Swiss-Prot
Match: EI2BA_RAT (Translation initiation factor eIF-2B subunit alpha OS=Rattus norvegicus GN=Eif2b1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  376 EAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLK 687
            + +T+  L   L KA ++L + D+ S+++++G +LF+R+++ TS LEY D++  +  +IER E F      +R  IA L   FI DG  IL H +SRVV+ VL+
Sbjct:   38 KGETIQGLRAHLTKAIETLCAVDS-SVAVSSGGELFLRFISLTS-LEYSDYSKCKKIMIERGELFLSRISLSRTKIASLCHAFIKDGARILTHAYSRVVLRVLE 139          
The following BLAST results are available for this feature:
BLAST of CX295287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EI2BA_DICDI1.450e-1543.81Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_SCHPO1.960e-1242.31Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_YEAST2.167e-1139.60Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_MACFA6.305e-1133.09Translation initiation factor eIF-2B subunit alpha... [more]
EI2BA_RAT8.235e-1138.46Translation initiation factor eIF-2B subunit alpha... [more]
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Properties
Property NameValue
Genbank descriptionC05070F05SK PhIFruit1 Citrus clementina cDNA clone C05070F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295287 ID=CX295287; Name=CX295287; organism=Citrus clementina; type=EST; length=692bp
AGATCAGCATCTTTTATCCTGGACAAAAACCAAAACGACACCGTTTATCC
GGCCGATTCCGTCACTCTAACTCCACCACCACCCTCAATCTCCACGCCCC
AAAACCCTAACCCTAATCTTAACCGAAACATGTCTATGTCGGCGTACTAC
CAGACACGGGCGGCGCACCACGGCGTCGTGACTAGCGACTGGCTGGCGCA
GTCGCAGGAGGCGGCCACGAGGGCAGTAGCGACGGGCGGACAGGAGATAG
TTGATGGAGGGAAAAGCGGGAGGGCGTTTAGTGTGATTGATGAGTTTAAT
AATTGGAGAAAGCAACCGGATTTGGCTGAGGCTGTGGCGGCTATACGTGC
TCTGGCGGCTGTTATTAGGAATAGTGAAGCGAAGACGATGATGGAGCTTG
AAATTGAGCTCAAAAAAGCCTCCGATTCGCTTAAATCTTGGGACACGACA
TCTATTTCGCTGACAGCAGGCTGTGACCTGTTCATGCGATACGTTACCAG
AACTTCAGCTTTAGAATATGAGGATTTTAATTCAGCTAGATCTCGATTGA
TTGAACGTGCAGAGAAGTTTGGAGAGATATCTTATAAGGCACGAAAGATC
ATTGCAATGCTTAGTCAAGATTTTATATTTGATGGTTGTACTATTTTGGT
GCACGGCTTTTCCAGAGTTGTCATGGAAGTACTGAAGATGGC
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