CX295290

Overview
NameCX295290
Unique NameCX295290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:653..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 467.618 bits (1202), Expect = 2.862e-131
Identity = 227/237 (95.78%), Postives = 236/237 (99.58%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA++FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 466.848 bits (1200), Expect = 4.881e-131
Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 3.164e-130
Identity = 226/237 (95.36%), Postives = 235/237 (99.16%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN+ KRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINDAKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 463.766 bits (1192), Expect = 4.132e-130
Identity = 227/237 (95.78%), Postives = 233/237 (98.31%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQI EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRG VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 7.049e-130
Identity = 225/237 (94.94%), Postives = 233/237 (98.31%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF P+GLTTEVKSVEMHHESL EALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 459.144 bits (1180), Expect = 1.018e-128
Identity = 224/236 (94.92%), Postives = 232/236 (98.31%), Query Frame = 1
Query:    4 FVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            FVPISGFEGDNMIERSTNLDWYKGPTLL+ALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG +KPGMVVTFGPSGLTTEVKSVEMHHESL EALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTVAVGV
Sbjct:  190 FVPISGFEGDNMIERSTNLDWYKGPTLLDALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 458.759 bits (1179), Expect = 1.329e-128
Identity = 223/236 (94.49%), Postives = 232/236 (98.31%), Query Frame = 1
Query:    4 FVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            F+PISGFEGDNMI+RSTNLDWYKGPTLLEALDQI+EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGPSGLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGV
Sbjct:  190 FIPISGFEGDNMIDRSTNLDWYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 458.373 bits (1178), Expect = 1.736e-128
Identity = 223/237 (94.09%), Postives = 233/237 (98.31%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALDQI+EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P+GLTTEVKSVEMHHESL EA PGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 455.677 bits (1171), Expect = 1.125e-127
Identity = 221/236 (93.64%), Postives = 232/236 (98.31%), Query Frame = 1
Query:    4 FVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            FVPISGFEGDNMIERSTNLDWYKGPTLLEALD INEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGV
Sbjct:  190 FVPISGFEGDNMIERSTNLDWYKGPTLLEALDLINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGV 425          
BLAST of CX295290 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 454.907 bits (1169), Expect = 1.920e-127
Identity = 222/237 (93.67%), Postives = 231/237 (97.47%), Query Frame = 1
Query:    1 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 711
            PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHESL EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGV
Sbjct:  189 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGV 425          
The following BLAST results are available for this feature:
BLAST of CX295290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_SOLLC2.862e-13195.78Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ORYSJ4.881e-13196.20Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC3.164e-13095.36Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MANES4.132e-13095.78Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ARATH7.049e-13094.94Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A1_DAUCA1.018e-12894.92Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_DAUCA1.329e-12894.49Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOYBN1.736e-12894.09Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MAIZE1.125e-12793.64Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_WHEAT1.920e-12793.67Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05070F08SK PhIFruit1 Citrus clementina cDNA clone C05070F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295290 ID=CX295290; Name=CX295290; organism=Citrus clementina; type=EST; length=713bp
CCATTTGTCCCAATCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTC
CACGAACCTTGACTGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACC
AGATCAATGAACCCAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTT
CAGGATGTCTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGT
TGAAACTGGTGTACTCAAGCCCGGTATGGTAGTCACATTCGGTCCGTCTG
GATTGACTACGGAAGTTAAGTCGGTTGAGATGCACCATGAGTCTCTCCAG
GAGGCACTTCCTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTCAGT
GAAGGATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCG
CCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCT
GGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCA
CATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTG
GTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGG
TTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGA
ATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCG
CTGTTGGAGTCAT
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