CX295302

Overview
NameCX295302
Unique NameCX295302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4005 contig Ccv1_Contig4005:1359..2026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295302 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.052e-71
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = -2
Query:  233 PAGD*APLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 667
            PAGD  PL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  447 PAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX295302 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.772e-69
Identity = 128/144 (88.89%), Postives = 133/144 (92.36%), Query Frame = -2
Query:  236 PAGD*APLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 667
            P  D  PLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  435 PENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX295302 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.175e-69
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = -2
Query:  233 PAGD*APLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 667
            PAGD  PL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  437 PAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX295302 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.827e-68
Identity = 129/142 (90.85%), Postives = 133/142 (93.66%), Query Frame = -2
Query:  242 PAGD*APLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 667
            PAGD  PL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  453 PAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CX295302 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  365 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 613
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CX295302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_ARATH5.052e-7192.41Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ2.772e-6988.89Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_PEA6.175e-6988.28Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_SPIOL6.827e-6890.85Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR2.019e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05070G08SK PhIFruit1 Citrus clementina cDNA clone C05070G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295302 ID=CX295302; Name=CX295302; organism=Citrus clementina; type=EST; length=668bp
TATTCTGTCAGCGCATTCCTCGGAAACATACTATTATTCCACCAAATTCA
AAAACCAGAAGCATATTCTCATGTCTTCTTCAACAAAACCGGACATAGTG
CAACACTCGCCCAGCACACTAAATAAATAAGCGGCAACTCACACGACTAA
GCAAAGTCTCTACCTCCAATATCCCTAGGGGGAATTATTTTTTGGGCTAG
AAACAAAAAAATTAAGGACTCACCAGGACTCAATTGCTACCCTGACGCAA
CTCTGGGCGCACAAAATCTGCATCTGGTGGCACTGAAATGTCAACAGTTG
GTCTCAACTGAGCACAGACTTCAATGGCTCCATGGACTGGATCAGAAAGG
AAGTTGCTGATGAGATCCCCATTGATGGGGGCATCATTGTCCACTGCCAC
CAAGGCTTGTTGTGTCAGGATGTAATCAAAACGAGGGGCCCATTTCCTTG
ATCCCAAACGGGCTGTGGTAGAGCAGTTGTCCACCATAAATGAAACTCCA
CGAGCATGCATGAATGGATTCAATGAATCCACTGACTCAATCACACTTTC
ATTGATGATCTCAGAATAGGAGTGCCCTTTCTTCCTCAGGATCTCAATCT
GGGCCATCATCAGAGCCGCATAAACACCTGCTGTGAATGGGTGTAATGGG
GCCTAGTCACCTGCTGGA
back to top