CX295324

Overview
NameCX295324
Unique NameCX295324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig634 contig Ccv1_Contig634:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA +  I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  185 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA +  I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  188 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA    I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  183 GLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA +  I A+PTV +T+ H+ S   CPVC++ + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA    I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   12 GLEELFEQL-SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL +     GPPPA    I A+PT++IT+ H+     CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 3
Query:   12 GLEELFEQLSAN-GRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL       GPPPA +  I ++PTV +TQ  + +   CPVC++ + +  + RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  185 GLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   12 GLEELFEQLSAN-GRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            GL+ +  QL       GPPPA +  I ++PTV +TQ  +     CPVC++ + +  E RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  184 GLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   51 RRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            +R PPPAA+  ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   49 QRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   51 RRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            +R PPPA++  ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   49 QRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
The following BLAST results are available for this feature:
BLAST of CX295324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RN126_HUMAN3.279e-2351.69RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN4.282e-2351.69RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN126_XENTR7.304e-2348.31RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_MOUSE7.304e-2350.56RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA1.627e-2248.31RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA3.625e-2247.19RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN115_MOUSE9.871e-2044.94RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN115_HUMAN9.871e-2046.07RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_XENTR1.862e-1848.68E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA7.074e-1847.37E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC05071A06SK PhIFruit1 Citrus clementina cDNA clone C05071A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295324 ID=CX295324; Name=CX295324; organism=Citrus clementina; type=EST; length=698bp
TTATAGGTCCTGGATTGGAAGAACTGTTTGAGCAGCTTTCAGCTAATGGT
CGACGTGGCCCTCCCCCAGCGGCGAGATCTGCAATTGATGCTATGCCCAC
CGTTAGGATCACACAGAGGCATCTCCGTTCTGATTCACACTGTCCAGTTT
GCCAAGATAAATTCGAGCTGGGGTCTGAAGCTAGACAAATGCCATGTAAC
CATATATACCACTCAGATTGTATTGTGCCATGGCTAGTGCAGCACAACTC
ATGTCCTGTATGTCGCCAAGAATTACCACTGCAAGGGTCAAGTAGCAGTC
GTATTCATCAAAGCTCAAGTGGTCAAAGTCGAAGCACCAGTTTTGGTAGT
AATGGCAGCGGAAGGGAGAATCAAGGAAGACGGAATTTGTTCTCTGGTTT
CTGGCCGTTCCGATCTTCGAATTCAAGCTCTAATCACAATGGAACAACTG
AAAGCAGTTCACCAGCAATGCACGAGAATAACCCTCACATGGGGTATTCC
GGATGGCCATTTGATTAAAGACTAGAAGTCAGTGTGTTAATAAATTGTTC
ATGATAAGTCGGTGTCTCAATTGATACCAAAAAGGACTTCTTAAAACTTT
GGAATTGATTGGGACATTGAAATCTACAAGTCCAGTGTGTCTCTTAAAGA
GTAATTGGGTGTCGTTTGTGTTCTACCGTCTTTTATGAAAATATACTT
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