CX295326

Overview
NameCX295326
Unique NameCX295326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig361 contig Ccv1_Contig361:115..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 83/194 (42.78%), Postives = 123/194 (63.40%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPF-VFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTT 582
            +E+++FLG  G+YR+FI +F+ +++P+   L K+      N     AF+KLK+L++  PI++ P+++  F L  DASD A+GAVL Q      H + Y S TLN+ ++NYST EKE+LA+V+A + FR YL+G    I +DH  L +L   KD  ++L RW + L EFD + K  KG EN VAD LSR+  + T
Sbjct:  440 KEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEET 629          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.120e-33
Identity = 79/192 (41.15%), Postives = 118/192 (61.46%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFND-SCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFD 576
            +E+R+FLG  G+YR+FI +++ +++P+ + L K           + AFEKLK L+   PI+Q P++   F L  DAS+ A+GAVL Q      H I + S TLND +LNYS  EKE+LA+V+A + FR YL+G + +I +DH  L++L   K+   +L RW + L E+  +    KG EN VAD LSR+  +
Sbjct:  439 KEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.496e-33
Identity = 77/201 (38.31%), Postives = 120/201 (59.70%), Query Frame = 1
Query:    1 VREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKII-IFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRL 567
            V+E++ FLG   +YR+FI+D++KV++PL NL            +   P   +++ L +F  LK +L SS I+  P ++ PF L  DAS++A+GAVL Q        I Y S +LN  + NY+T EKEMLA++++L+  R+YL G   I ++TDH  L + L  ++   +L RW   ++E++ E   K G  N+VAD LSR+
Sbjct:  355 VKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 1
Query:    1 VREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDAPFVFNDSCLVAFEKLKHLLTSSPII-QPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCK-IIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSR 564
            V +VRSFLG A +YR FIKDF+ ++RP+ ++L           +K  P  FN++   AF++L+++L S  +I + P++  PF+L  DAS   +GAVL Q        I   S TL   + NY+T E+E+LA+V+AL K +++L G + I IFTDH  L + +  ++   ++ RW   + + + +   K G EN VAD LSR
Sbjct:  414 VYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQE----GRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTTTEPLP 597
            +E+R FLG   + R+FI   S+++ PL NLL KD  + +  +   A E +K  L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL RW L LQ+F+ E   + G+ N +AD LSR+  +  TEP+P
Sbjct:  640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEPIP 840          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTTTEPLP 597
            +E+R FLG   + R+FI   S+++ PL NLL KD  + +  +   A E +K  L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL RW L LQ+F+ E   + G+ N +AD LSR+  +  TEP+P
Sbjct:  640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEPIP 840          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTTTEPLP 597
            +E+R FLG   + R+FI   S+++ PL NLL KD  + +  +   A E +K  L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL RW L LQ+F+ E   + G+ N +AD LSR+  +  TEP+P
Sbjct:  640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEPIP 840          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 1
Query:   13 RSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRL 567
            R F+    +YRRFIK+F+  SR +  L  K+ PF + D C  AF  LK  L +  ++Q P++S  F +  DAS  A GAVL Q  +     + YAS      + N STTE+E+ A+ +A+  FR Y+ G    + TDH  L YL +  +  ++L R  L L+E++   +  KG +N VAD LSR+
Sbjct:  551 RRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.416e-22
Identity = 67/198 (33.84%), Postives = 103/198 (52.02%), Query Frame = 1
Query:    1 VREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTTTE 588
            V++ + FLG   +YRRFI + SK+++P+   +   + +        A EKLK  L +SP++ P N    + L  DAS   +GAVL +    + +  V+ Y S +L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +N+VAD +SR  +  T E
Sbjct:  847 VKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPE 1042          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.532e-22
Identity = 66/198 (33.33%), Postives = 103/198 (52.02%), Query Frame = 1
Query:    1 VREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKTRLIRWVLLLQEFDLEFKDKKGTENIVADHLSRLHFDTTTE 588
            V++ + FLG   +YRRFI + SK+++P+   +   + +        A +KLK  L +SP++ P N    + L  DAS   +GAVL +    + +  V+ Y S +L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +N+VAD +SR  +  T E
Sbjct:  821 VKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPE 1016          
The following BLAST results are available for this feature:
BLAST of CX295326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
POL3_DROME1.670e-3742.78Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME1.120e-3341.15Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME2.496e-3338.31Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME1.085e-2837.81Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO1.200e-2738.92Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO1.200e-2738.92Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO1.200e-2738.92Retrotransposable element Tf2 155 kDa protein type... [more]
POL4_DROME1.327e-2637.84Retrovirus-related Pol polyprotein from transposon... [more]
YI31B_YEAST4.416e-2233.84Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST7.532e-2233.33Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC05071A08SK PhIFruit1 Citrus clementina cDNA clone C05071A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295326 ID=CX295326; Name=CX295326; organism=Citrus clementina; type=EST; length=673bp
GTCAGAGAAGTAAGATCTTTCCTTGGGCATGCTGGTTTCTATAGACGTTT
CATTAAAGATTTTAGCAAAGTTTCTAGACCCTTATGCAATTTACTTGCTA
AGGATGCACCTTTTGTCTTTAATGATTCATGTCTTGTGGCATTTGAAAAA
TTAAAGCATTTGTTGACATCATCACCCATCATTCAGCCCCCAAACTGGAG
CTTACCATTTGAGCTCATGTGTGATGCATCTGACTATGCAGTAGGAGCAG
TATTAGGACAAAGAGTTGATCTAATTCCCCACGTTATTTACTATGCTAGT
ATGACATTAAATGATGCACAGTTGAACTATTCAACTACTGAAAAAGAAAT
GCTAGCAGTAGTGTTTGCATTGGAAAAATTTCGATCATATCTCATTGGTT
GTAAAATAATTATATTCACGGATCATGCTGCTCTTAAATATCTTCTCACA
AAGAAAGATGCAAAAACTAGACTAATTCGTTGGGTGTTACTTTTGCAGGA
ATTTGACTTGGAATTCAAAGATAAGAAAGGGACAGAAAATATTGTGGCGG
ACCACCTTTCTCGTCTCCATTTTGACACAACTACAGAGCCCTTACCATTA
AATGAGTCATTCCCTGATGAACAATTGATGAATGTGGAAGTATTACCGTG
GTATGCTGACATCGTGAATTATC
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