CX295354

Overview
NameCX295354
Unique NameCX295354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14840 contig Ccv1_Contig14840:73..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 7.495e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.789e-70
Identity = 127/205 (61.95%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 126/205 (61.46%), Postives = 165/205 (80.49%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.411e-68
Identity = 123/205 (60.00%), Postives = 163/205 (79.51%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  + IDF GHALAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.371e-68
Identity = 123/205 (60.00%), Postives = 161/205 (78.54%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF     PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  + IDF GHALAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET 205          
The following BLAST results are available for this feature:
BLAST of CX295354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDIA_MOUSE7.495e-7061.95Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_RAT9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_BOVIN9.789e-7061.95Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_CANFA1.670e-6961.46Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIB_BOVIN2.411e-6860.00Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG5.371e-6860.00Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionC05071C12SK PhIFruit1 Citrus clementina cDNA clone C05071C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295354 ID=CX295354; Name=CX295354; organism=Citrus clementina; type=EST; length=678bp
GCTCGTGCCGATTCGGCACGAGGCTCTGAATCAGAAATCAAAAATCAAAA
ATCAAGTCATCAACATGGATGAAGAGTATGATGTCATCGTCTTGGGAACC
GGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATGGCCTCAA
GGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCATCATCGC
TCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACAACCTCCT
GCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCCCGAAGTT
TATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACTGATGTTA
CAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTATAATAAA
GGAAAGGTCCATAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTCC
ACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTATG
TTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTTG
ACCAGGGTGACCACTAGAGAGTTGATTGCGAAGTATGGTCTTGATGACAA
CACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGTT
ACTTAAACGAACCTGCTCTTGATACAGT
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