CX295356

Overview
NameCX295356
Unique NameCX295356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295356_ssr681 microsatellite CX295356_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8632 contig Ccv1_Contig8632:105..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295356 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 104/185 (56.22%), Postives = 127/185 (68.65%), Query Frame = 1 
Query:   22 HHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLA-----YHHQQQQFSXXXXXXXXXXXXXXLHLTAAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXXTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 561
            +HAV+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+     A     Y+++  Q                LHLT+  P     P +++G    +EED SNP         T KR RTKFTAEQKEKML FAE+LGWRIQKHD+ +VEQFCAETGV+R VLK+WMHNNK++LGKKP
Sbjct:   55 NHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNRPPQ---------PHQPPGYLHLTS--PAAPYRPPAASG----DEEDTSNPSSSGG----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220
[Close]
BLAST of CX295356 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 91/184 (49.46%), Postives = 110/184 (59.78%), Query Frame = 1 
Query:   22 HHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQQQFSXXXXXXXXXXXXXXLHL----TAAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXXTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 561
            + AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE        +HH   Q                +      + A P  LALP        RE  +              +KRHRTKFTAEQKE+ML  AE++GWRIQ+ D+  +++FC ETGV R VLKVW+HNNKHTLGK P
Sbjct:   81 NQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELP-----YFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQ-----RERSEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254
The following BLAST results are available for this feature:
BLAST of CX295356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH9.154e-5056.22ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH3.725e-4349.46ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC05071D02SK PhIFruit1 Citrus clementina cDNA clone C05071D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295356 ID=CX295356; Name=CX295356; organism=Citrus clementina; type=EST; length=698bp
GGATTCGGCCGAGGGTCTTAGCATCACGCTGTCAGCATCGGTGGACACGC
GGTTGACGGATGCGGGGAGTTCATGGCAGCTGGCGACGAAGGCACCCTCG
AATCCCTCAAATGCGCCGCGTGTAACTGCCACAGGAATTTCCACCGTAAG
GAAACTGACGGTGCCTCGCCGTTGGCCTACCATCACCAGCAGCAGCAATT
CTCGCCTTACTATCGGGGGCCTCCGCCTCCGGCTCCAGCTGGGTACTTGC
ACTTGACAGCTGCCCAGCCGAGGCCGTTAGCGCTGCCGTCGTCGTCAGCC
GGTGGCTATAGTAGAGAAGAGGAAGATGTGTCGAATCCAAGCAGCAGCGG
CGGGGGAAGTGGCGGAACGAAGAAAAGGCACAGAACGAAGTTCACAGCTG
AGCAAAAGGAGAAGATGCTAGGGTTTGCTGAGCAGCTGGGCTGGAGAATC
CAGAAGCACGATGAGGCTTCAGTGGAGCAGTTCTGCGCTGAGACTGGTGT
CAAAAGGCATGTGCTTAAGGTTTGGATGCATAATAACAAGCACACACTTG
GTAAGAAACCCTAATAATTTCTCCAAAAAATAACAACCTCGATCGAAGAA
ACAGTATCATTGGGACTGAACAAAACAAATTCTATTCCGTTGACTTCAAT
TTAGCAGAGATATATATTAGACAGTTTTCTTTAATTAATTAATTATTA
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