CX295358

Overview
NameCX295358
Unique NameCX295358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295358 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36
Identity = 75/150 (50.00%), Postives = 108/150 (72.00%), Query Frame = 1 
Query:    1 YLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMGLIKFLLSNSPVLEIMSITPCTFVTERKVNMLIELVRFIRASPRAEIIFIQN 450
            YLSIGDDPGRLP+TY HLK IELYQV FED  E+LV++RL+T+SPNLKEL +S S      +E    D +E++ + D     L+ VK+TD SG+ +E+  I+FLL  SPVLE ++++      + K++M+IEL+R+ R SPRA+++F+Q+
Sbjct:  268 YLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGFDLFERD-YFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFLQD 416
The following BLAST results are available for this feature:
BLAST of CX295358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FDL1_ARATH5.793e-3650.00F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC05071D04SK PhIFruit1 Citrus clementina cDNA clone C05071D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295358 ID=CX295358; Name=CX295358; organism=Citrus clementina; type=EST; length=536bp
TATTTGAGTATAGGTGATGATCCGGGAAGACTTCCGATTACATATAATCA
TCTAAAAGTGATTGAACTTTATCAAGTGAGTTTTGAAGATATGAAAGAGA
TACTCGTTGTTATTCGATTGATTACGAACTCTCCTAATCTGAAGGAACTT
CATATTTCAGGTTCCTCAAATACATTAGCTGCTATAGAAGCACCTGATTT
GGATTTTTGGGAAAAAGAATGCCATGCAGATTGCTCTTTTAAACAACTGA
AACTTGTGAAGATGACAGATATATCTGGTGTACCCCACGAGATGGGGCTA
ATCAAATTTTTGCTTAGTAATTCTCCAGTGCTTGAGATAATGAGTATCAC
CCCTTGCACATTTGTTACAGAGAGAAAAGTGAATATGTTGATTGAGTTAG
TGAGATTTATACGAGCTTCTCCTCGAGCAGAAATTATATTTATTCAGAAT
TAAGCATTGTACTTCCCATTTAAAGTTCTCATTTGCTTCCAAATAGTCTC
CCCCCCGCCACCCCCAACCAAAAAAAAAAAAAAAAA
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