CX295366

Overview
NameCX295366
Unique NameCX295366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295366_ssr27 microsatellite CX295366_ssr27:27..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig644 contig Ccv1_Contig644:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295366 vs. ExPASy Swiss-Prot
Match: GLPQ2_ARATH (Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.004e-59
Identity = 107/183 (58.47%), Postives = 136/183 (74.32%), Query Frame = 3
Query:  180 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIIPPGLWLNIQHDAFYAQHNLSMRSFVLS 710
            CGVI      AQ+ AQ     S W TLTGDPP V+ARGGFSG+FPDSS+ AY   ++TS P  +LWCDVQLTKD  GICFPDL + N+S+I  V+ T+QK+Y VNGVPT GWF+ID++L DL ++ L +G+ SR+ KFDGN   I+TVQ ++ Q+ P   WLN+QHDAFYAQHNLSM SF+++
Sbjct:   13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLKDLKDVNLIRGILSRSKKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSFLVA 195          
BLAST of CX295366 vs. ExPASy Swiss-Prot
Match: GLPQ3_ARATH (Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 106/184 (57.61%), Postives = 134/184 (72.83%), Query Frame = 3
Query:  180 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIIPPGLWLNIQHDAFYAQHNLSMRSFVLSV 713
            CGV+      AQ+ AQ S  TSRWQTL GD P V+ARGGFSG++PDSS  AY+L  +TS   V+LWCD+QLTKD  GICFPDL L NAS I +V+  ++K+Y VNGV T GWF  D++L +L N +L +G+ SRTD+FDGNG+ I T++D+   +   G WLN+QHDAFY Q NLSM SF+LSV
Sbjct:   21 CGVVLIHLFAAQIDAQRS--TSRWQTLNGDAPLVIARGGFSGLYPDSSIAAYQLATLTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTKGWFPNDFSLTELQNFLLIRGILSRTDRFDGNGYLISTIEDVVTTLNREGFWLNVQHDAFYEQQNLSMSSFLLSV 202          
BLAST of CX295366 vs. ExPASy Swiss-Prot
Match: GLPQ1_ARATH (Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 102/173 (58.96%), Postives = 128/173 (73.99%), Query Frame = 3
Query:  195 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIIPPGLWLNIQHDAFYAQHNLSMRSFVLSV 713
            Q+ AQ S   S WQTLTGD P V+ARGGFSG+ PDSS  AY     TS P  +LWCDVQLTKD  G+CFPD+K+ NASNI  V+  ++ +YL+NGVPT  WF+ID+   DL+ +IL QG+ SR+  FDGN + I TV+D++ Q+ P G WLN+QHDAFYAQHNLSM SF+LS+
Sbjct:   32 QLFAQRSK--SPWQTLTGDAPLVIARGGFSGLLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSYLLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFLLSI 202          
The following BLAST results are available for this feature:
BLAST of CX295366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GLPQ2_ARATH1.004e-5958.47Probable glycerophosphoryl diester phosphodiestera... [more]
GLPQ3_ARATH2.094e-5757.61Probable glycerophosphoryl diester phosphodiestera... [more]
GLPQ1_ARATH2.315e-5658.96Probable glycerophosphoryl diester phosphodiestera... [more]
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Properties
Property NameValue
Genbank descriptionC05071D12SK PhIFruit1 Citrus clementina cDNA clone C05071D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295366 ID=CX295366; Name=CX295366; organism=Citrus clementina; type=EST; length=714bp
GGCCTCGTGCCGAATTCGGCACGAGGCTCTCTCTCTCTCTCTCTAAAGAG
GAAAAATCTCGCACATTCATCAAGAGGATCGGCAGGAACGGTGGAGCTCC
GGCGGAGTTAAATTTGTCGGCAATGTGTAACACACGCGCTCTTGGCCTGC
TACTCGTTTCAGCTCTGGTTGTACTTCACTGTGGAGTTATAGCTCAAGTC
TCGGCTCAGGGATCTAATGCTACGAGTCGATGGCAGACACTAACCGGAGA
TCCACCATTTGTAGTAGCACGTGGGGGATTTTCGGGTATATTTCCAGATT
CTAGTTTCGTAGCTTATCGTTTGACGCTGATTACGAGTGCGCCCAGTGTT
ATCTTATGGTGTGATGTGCAATTGACCAAAGATGAAGCTGGGATTTGCTT
CCCTGATCTTAAGCTTGATAATGCTTCTAACATCGCTCAAGTCTTTAAGA
CTCAGCAAAAGAATTATCTTGTTAATGGGGTCCCAACCCCAGGATGGTTT
TCCATTGACTACACGCTTAATGACCTATCGAATATAATCTTAAATCAAGG
AGTCTATTCTCGAACCGATAAGTTTGATGGCAATGGGTTCCAAATCCTCA
CTGTTCAGGATATGGCAAGACAAATAATACCACCAGGCTTATGGTTGAAT
ATTCAGCACGATGCATTCTACGCACAACACAATTTGAGTATGAGAAGCTT
TGTACTTTCTGTAT
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