CX295371

Overview
NameCX295371
Unique NameCX295371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1_ARATH (mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1
Query:   76 MSQNGKLMANLDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHSLDFSLL 303
            MSQNGK++ NLDQ ST+LLNLTVLQRIDP+IEEILITAAHVTFYEFNI+LSQWS KDVEGSLFVVKR+    F  +
Sbjct:    1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFI 76          

HSP 2 Score: 121.709 bits (304), Expect = 3.428e-27
Identity = 66/120 (55.00%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  270 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVQGGLQELDG*PCYSPSH*LKDIEG*NRSIWGVASYCLLRILNAYSKVPQKSKVATSKRQ 629
            +++TQPRFQF+VMNRRNTDNLVEN LGDFE+EVQ PYLLYRNASQEVNGIWFYN RECEEV                                 +    RIL+AYSKV QK K ++SK +
Sbjct:   66 KRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEV---------------------------------ATLFNRILSAYSKVNQKPKASSSKSE 152          
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1B_HUMAN (mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.070e-16
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  273 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEV 452
            ++  P+  F +MNR + +N  E    D +F++Q P+LLYRNA   + GIWFY+  EC+ +
Sbjct:   64 RSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRI 123          

HSP 2 Score: 46.595 bits (109), Expect = 1.070e-16
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  130 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 285
            ++L  LQR DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67          
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1B_PONAB (mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.071e-16
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  273 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEV 452
            ++  P+  F +MNR + +N  E    D +F++Q P+LLYRNA   + GIWFY+  EC+ +
Sbjct:   64 RSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRI 123          

HSP 2 Score: 46.595 bits (109), Expect = 1.071e-16
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  130 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 285
            ++L  LQR DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67          
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1B_BOVIN (mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 8.726e-16
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 3
Query:  273 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEV 452
            ++  P+  F +MNR + +N  E    D +F +Q P+LLYRNA   + GIWFY+  EC+ +
Sbjct:   62 RSASPKHGFTIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRI 121          

HSP 2 Score: 45.4394 bits (106), Expect = 8.726e-16
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  130 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 285
            ++L  L+R DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSAS 65          
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1A_MOUSE (mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.089e-15
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  270 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEV 452
            +++  P   F ++NR N  NLVE    D EF++  P+LLYRNAS  +  IWFY+  +C  +
Sbjct:   78 RRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRI 138          

HSP 2 Score: 41.5874 bits (96), Expect = 7.089e-15
Identity = 21/65 (32.31%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   91 KLMANLDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 285
            +L++  +Q+    ++L  L++ DP+I  I      V  Y F    +QW   D+EG+LFV +R+ S
Sbjct:   22 ELLSRAEQE----MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSAS 82          
BLAST of CX295371 vs. ExPASy Swiss-Prot
Match: DCP1A_HUMAN (mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.218e-15
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  270 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEV 452
            +++  P   F ++NR N  NLVE    D EF++  P+LLYRNAS  +  IWFY+  +C  +
Sbjct:   58 RRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRI 118          

HSP 2 Score: 41.2022 bits (95), Expect = 9.218e-15
Identity = 19/52 (36.54%), Postives = 29/52 (55.77%), Query Frame = 1
Query:  130 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 285
            ++L  L++ DP+I  I      V  Y F    +QW   D+EG+LFV +R+ S
Sbjct:   11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSAS 62          
The following BLAST results are available for this feature:
BLAST of CX295371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DCP1_ARATH2.010e-2778.95mRNA-decapping enzyme-like protein OS=Arabidopsis ... [more]
DCP1B_HUMAN1.070e-1640.00mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B ... [more]
DCP1B_PONAB1.071e-1640.00mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B ... [more]
DCP1B_BOVIN8.726e-1640.00mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE... [more]
DCP1A_MOUSE7.089e-1540.98mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a ... [more]
DCP1A_HUMAN9.218e-1540.98mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A ... [more]
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Properties
Property NameValue
Genbank descriptionC05071E05SK PhIFruit1 Citrus clementina cDNA clone C05071E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295371 ID=CX295371; Name=CX295371; organism=Citrus clementina; type=EST; length=668bp
TATTTACAAAAGAGAGAGCTCACAGAAAAACCATGGCGCTTGTGCTCGAG
GCAGAGCCCAAAAGGACTATGAAAAATGTCGCAGAACGGAAAATTAATGG
CTAATCTGGACCAGCAGAGCACAAAACTCCTAAACCTGACAGTTCTTCAG
CGAATCGATCCATTCATTGAGGAGATCCTCATCACGGCCGCTCATGTCAC
CTTCTACGAGTTCAACATCGACCTCAGCCAATGGAGTCATAAGGATGTTG
AAGGATCTCTCTTCGTCGTCAAAAGAACACACAGCCTCGATTTCAGTTTG
TTGTGATGAATCGACGTAATACAGATAATTTAGTGGAAAATCCTTTGGGA
GATTTTGAGTTTGAAGTTCAGGTTCCGTATTTGTTATATCGGAATGCATC
CCAAGAAGTAAATGGGATTTGGTTCTACAATGCTCGTGAATGTGAAGAGG
TACAAGGAGGGCTACAGGAACTGGATGGTTGACCATGCTATTCACCCAGT
CATTGATTGAAGGATATTGAAGGCTAAAATAGGAGTATATGGGGTGTTGC
TAGCTATTGCCTTTTAAGGATTCTGAATGCATATTCCAAGGTGCCTCAAA
AGTCGAAAGTTGCTACATCTAAAAGACAGCTTTGACTGTGGGGAATACTT
CTAATGCAGCAATCTCTG
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