CX295374

Overview
NameCX295374
Unique NameCX295374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295374_ssr439 microsatellite CX295374_ssr439:439..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1449 contig Ccv1_Contig1449:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295374 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 ATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLANKLH 165
            A DKRTRP VKKMAK Q YFFKEF+RAI ILSENNPLTG+KGEIRK CNLANK H
Sbjct:  276 AHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
[Close]
BLAST of CX295374 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 ATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 156
            ATD RT P+V KMA   +YF ++FSR + +LSE NPLTG +GEIRK C   N
Sbjct:  276 ATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327
The following BLAST results are available for this feature:
BLAST of CX295374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PER42_ARATH4.977e-1983.64Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH8.510e-1157.69Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC05071E08SK PhIFruit1 Citrus clementina cDNA clone C05071E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295374 ID=CX295374; Name=CX295374; organism=Citrus clementina; type=EST; length=540bp
GCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGATGGCCAAGAGTCA
AGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACTATCCTTTCTGAGA
ACAACCCTCTCACCGGTACAAAGGGTGAGATCAGAAAGGTTTGCAATCTT
GCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACAGCTGTATCTGCTG
CAACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTTCTTCTATGAGGAA
GAAAAGAGTGTGAGATGAGCTCCCAATAAGATGGTTTTTCTAGATGGGTT
TGTTTCCTGTAAGATGTTCGTGTTACTACTACTATGTTCCTTAGATGTAC
TGTCTAATGTTTAAGCCTAGGCTTTCCTTGTCCTCGATGGTGTGAGCATG
ATGTTATTAGTATTTAGTAATGGCAATGTAGATGTGGGATGTATGTATGT
ATGTATGTATGCATGGATGGTGGTGATGGTGTATGGTGCATGGATTTATA
CAATGATGATAATTGATTAAAAAAAAAAAAAAAAAAAAAA
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