CX295402

Overview
NameCX295402
Unique NameCX295402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11242 contig Ccv1_Contig11242:288..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.828e-93
Identity = 165/192 (85.94%), Postives = 181/192 (94.27%), Query Frame = 2
Query:    2 LGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 577
            LGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQERCV+HAAW+SPTGLPA+T I+R+VT+GAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSVLPPGRRIP+GELW GNPARF+RTLT+EETLEIPKLAVAIN LS  +FSEFLPYST+YLEVEKFKKSLGI I
Sbjct:   65 LGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKKSLGIAI 256          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.073e-93
Identity = 164/192 (85.42%), Postives = 180/192 (93.75%), Query Frame = 2
Query:    2 LGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 577
            LGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQERCV+HAAW+SPTGLPA T I+R+VT+GAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIP+GELW GNPARF+RTLT+EETLEIPKLAVAIN LS  +FSEFLPYSTVYLEVEKFKKSLGI +
Sbjct:   61 LGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 2
Query:    5 GQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH 502
            G   P V   +++APN  + G V +   +S+W  +VLRGD+N I +G  + V +R V+H + N P G P  T I   V IG    + + TI  E  IG  S L +GS+VE +  LEAGS+L  G+ I +GE W G+PA+F+R +T ++  ++ K+     +LS+ H
Sbjct:   48 GDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLG-PKPTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDESQLEKIIEQNINLSEQH 212          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 51/159 (32.08%), Postives = 88/159 (55.35%), Query Frame = 2
Query:   23 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKS 499
            ++ +  +A   V+ G VT+ D +SVW  +V+RGD++KI +G  SN+Q+ CV+H +   P      T I  +V+IG    +  C IE   ++G ++ ++ G+ +  + I+ A +++   + IP   L  G P R VR LT EE   I + A+    LS++
Sbjct:    2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKGYP------TIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSET 154          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 2
Query:   17 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS---PTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 448
            P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +LH    S   P G P   +I   VT+G    L  CTI    ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct:   13 PQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPL--TIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 2
Query:   17 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS---PTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 448
            P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +LH    S   P G P   +I   VT+G    L  CTI    ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct:   13 PQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPL--TIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:   17 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKL 469
            P +   A++A N  + G V + + +S+W   V+RGD+    +G   N+Q+   LH + N          IE   TIG   +L S  I    +IG  SI+++G+ +   A + AGS++PPG+ IP G L  G PA+ +R LT E+  ++ ++
Sbjct:   10 PDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNKTL------LIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKDMQRI 154          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 45/139 (32.37%), Postives = 81/139 (58.27%), Query Frame = 2
Query:   32 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 448
            D+++AP+  + G+V +  GASVW G+VLRGD   I +G  SNVQ+  V+H     P       ++ + VT+G    L  C++    ++G +++++ G+ +  + I+ A +++P G+ IP G L  G+P + VR L+  +
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMGYP------LTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELSEPQ 147          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 44/145 (30.34%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   14 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 448
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+M+   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
BLAST of CX295402 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   14 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 448
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
The following BLAST results are available for this feature:
BLAST of CX295402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
UMP8_ARATH1.828e-9385.94Uncharacterized protein At3g48680, mitochondrial O... [more]
UMP7_ARATH9.073e-9385.42Uncharacterized protein At5g63510, mitochondrial O... [more]
Y2881_DICDI2.783e-2537.95Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
Y304_METJA5.084e-1932.08Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
YRDA_SHIFL1.932e-1832.65Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI1.932e-1832.65Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
YTOA_BACSU5.621e-1832.45Uncharacterized transferase ytoA OS=Bacillus subti... [more]
Y3753_PSEAE9.587e-1832.37Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
CAIE_SALA42.210e-1430.34Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_SALTY6.431e-1429.66Carnitine operon protein caiE OS=Salmonella typhim... [more]

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Properties
Property NameValue
Genbank descriptionC05071G12SK PhIFruit1 Citrus clementina cDNA clone C05071G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295402 ID=CX295402; Name=CX295402; organism=Citrus clementina; type=EST; length=716bp
GTTGGGCCAGTGGGTTCCGAAGGTGGCGGTCGATGCCTATGTGGCTCCCA
ACGTTGTCCTGGCCGGCCAGGTCACTGTCTGCGACGGAGCCTCCGTCTGG
CCTGGCTCTGTCCTACGTGGCGATCTTAATAAGATTACCGTCGGTTTCTG
CTCCAATGTGCAAGAGCGATGTGTACTTCACGCGGCTTGGAATTCTCCTA
CCGGGCTGCCGGCAGAAACATCCATTGAGAGATTTGTCACAATTGGTGCG
TACTGTTCGTTGCGCTCATGCACAATTGAGCCAGAGTGCATTATCGGGCA
GCATTCCATCCTTATGGAAGGTTCTATGGTTGAGACGCACGCTATCCTTG
AAGCTGGGTCTGTTCTTCCCCCAGGGAGGAGAATTCCAACTGGTGAGCTT
TGGGCAGGCAATCCAGCAAGGTTTGTCAGGACTTTGACCCATGAAGAAAC
CTTGGAAATCCCAAAACTTGCTGTTGCAATTAACGATCTGAGCAAAAGCC
ATTTCTCAGAGTTCCTCCCTTACTCGACAGTATATTTGGAAGTTGAAAAG
TTCAAAAAGTCCTTGGGGATTACTATCTAATGATTTTCAGTGTCCAGTTA
TTCATGTATCAATTGCAGCTTTCCGCGCATGAAAATAAGCAGCTTCAGAA
CACACAAAGCAAGTTTTTGATTCCTTGTCGCTGAATTTGATTTTGCTGGC
TGTTGAATGAATTGGA
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