CX295406

Overview
NameCX295406
Unique NameCX295406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14793 contig Ccv1_Contig14793:47..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  129 PNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 539
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.491e-27
Identity = 56/129 (43.41%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 521
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 518
            F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   27 FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 539
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.577e-24
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 527
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.850e-23
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 542
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  126 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 515
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 44/130 (33.85%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  126 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 515
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
BLAST of CX295406 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  144 FSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMGFMKAEPMSGC 506
            F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  L+ S + DC  +   A G  + S+V L+    I+ +TR+   + F       GC
Sbjct:    9 FHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSFRAKTDAPGC 131          
The following BLAST results are available for this feature:
BLAST of CX295406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE4.539e-2943.80Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE2.491e-2743.41Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC8.012e-2641.60Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR1.785e-2542.11Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR2.577e-2441.86Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL2.850e-2339.71Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU5.374e-2235.38Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU1.121e-1933.85Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA1.467e-1134.13Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionC05071H05SK PhIFruit1 Citrus clementina cDNA clone C05071H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295406 ID=CX295406; Name=CX295406; organism=Citrus clementina; type=EST; length=649bp
CTAGAATTCACTCATTTGCTCTCAATATTCAATCTTGTTCAGCTTCCTTG
ATCTCCCATAAGACAATGGCTAGAACATTGTTGTTGATCGCTCTCTGCGT
GCTGCCGGCTCTGGTGAGCGCGGTCCGGCCCAACACTAAACCGTTCTCGG
TTGAAGGACGCGTGTACTGCGACACCTGCCAAGCCGGCTTTGAGACCCCC
GCTACCACCTACATCGCCGGTGCCAAGGTTAAGGTTGAATGCAAAGACAG
GAAGTCAATGCAAGTAGTATATAGCAGGGAAGGGAAAACAGACTCAACTG
GAACATATAAGATCCTCGTTTCAGAAGACCATCAGGATCAACTTTGCGAT
GCTGTCCTCATTAGTAGCCCCCAGAATGACTGCAAAACAGTTGCCCCAGG
GCGTGAGCGTTCCCGTGTGATCTTGACCAGTTACAACGGCATTTCTTCTG
AAACCCGATATGCCAATTCAATGGGCTTCATGAAGGCAGAGCCCATGTCT
GGCTGTGCTGAGGTTCTCAGGCTATATCAGGAGGAGGATGTGTAGAGAAT
GGTGTGGCATGGTTTTTTCTATCGCTTTCCATTTGTTTAAGCTTTGTGTT
GCCTTATACTGTCTCTTCTATTAGTAGTGCCCGGATGGCTGTGTTGTTT
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