CX295437

Overview
NameCX295437
Unique NameCX295437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:1309..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP4_ARATH (Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.115e-29
Identity = 62/76 (81.58%), Postives = 74/76 (97.37%), Query Frame = 3
Query:   24 LTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            +TTEK+VLV+SGHEKL ++N+SL++LI+SRLPYLN MNMLQVEILKRLR+D+DN+KLRDALLITINGIAAGMRNTG
Sbjct:  957 MTTEKYVLVISGHEKLLQDNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 1032          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP2_CHLRE (Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 3
Query:   42 VLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            +L V+GHE L  NN +L +LI  R P+++P+N+LQVE+L+RLRQD +N +LRDALLI+INGIAAGMRNTG
Sbjct: 1152 ILKVTGHENLLSNNPTLSKLISMRSPFVDPINILQVEVLRRLRQDPNNMRLRDALLISINGIAAGMRNTG 1221          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_NITEC (Phosphoenolpyruvate carboxylase OS=Nitrosomonas eutropha (strain C91) GN=ppc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   36 KFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            K++  ++GH +L ++N +L R I  R PY++PMN LQVE+L+R R  DD+  +R A+ +TING+A G+RN+G
Sbjct:  862 KWLFAITGHTELLQDNPTLARSIRIRTPYIDPMNHLQVELLRRYRSGDDDDAIRRAIHLTINGVATGLRNSG 933          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_NOCFA (Phosphoenolpyruvate carboxylase OS=Nocardia farcinica GN=ppc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    3 G*AKEGALTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            G  +E    T +    ++GH++L  +NRSL   I +R PYL P+N +QVE+L+RLR  DD+  ++  +L+T+NG+A  +RN+G
Sbjct:  841 GMIREEHARTLRMHAAITGHDQLLADNRSLAESIHNRFPYLEPLNQMQVELLRRLRSGDDSELVKRGILLTMNGLATALRNSG 923          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURVG (Phosphoenolpyruvate carboxylase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ppc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   30 TEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T + +  ++GHE     N  L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  924 TAQALAEITGHEGRLATNPLLARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 997          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_NITEU (Phosphoenolpyruvate carboxylase OS=Nitrosomonas europaea GN=ppc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 31/72 (43.06%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   36 KFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            K++  ++G+ +L ++N +L R I  R PY++P+N LQ+E+L+R R  DD+  +R A+ +TING+A G+RN+G
Sbjct:  862 KWLFAITGYSELLQDNPTLARSIRIRTPYIDPLNHLQIELLRRYRSGDDDDTVRRAIHLTINGVATGLRNSG 933          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_LACDA (Phosphoenolpyruvate carboxylase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=ppc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   12 KEGALTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            KE  LT E  +L + GH KL E+N SL R ++ RLPY N +N +Q+E++KR RQ+  +      + ITING+A+G+RN+G
Sbjct:  831 KEWELTKE-VILQIEGHSKLLEDNPSLERSLDYRLPYFNVLNYVQLEMIKRGRQEKLSGIYESIIHITINGVASGLRNSG 909          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURPS (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURP6 (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei (strain 668) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURMS (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain SAVP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
The following BLAST results are available for this feature:
BLAST of CX295437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CAPP4_ARATH1.115e-2981.58Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis t... [more]
CAPP2_CHLRE2.330e-1964.29Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas... [more]
CAPP_NITEC5.028e-1447.22Phosphoenolpyruvate carboxylase OS=Nitrosomonas eu... [more]
CAPP_NOCFA1.463e-1340.96Phosphoenolpyruvate carboxylase OS=Nocardia farcin... [more]
CAPP_BURVG3.259e-1350.00Phosphoenolpyruvate carboxylase OS=Burkholderia vi... [more]
CAPP_NITEU7.260e-1343.06Phosphoenolpyruvate carboxylase OS=Nitrosomonas eu... [more]
CAPP_LACDA3.603e-1246.25Phosphoenolpyruvate carboxylase OS=Lactobacillus d... [more]
CAPP_BURPS4.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURP64.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURMS4.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]

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Properties
Property NameValue
Genbank descriptionC05072B12SK PhIFruit1 Citrus clementina cDNA clone C05072B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295437 ID=CX295437; Name=CX295437; organism=Citrus clementina; type=EST; length=551bp
GAGGCTGAGCTAAGGAGGGAGCTCTTACAACTGAGAAGTTCGTACTTGTG
GTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGCAGTTTGAGGAGGCT
GATTGAGAGCAGACTCCCATATCTCAATCCTATGAATATGTTGCAGGTGG
AGATACTGAAGAGATTGAGACAGGATGATGATAACCATAAACTCAGAGAT
GCATTGCTCATCACTATAAATGGAATAGCTGCTGGTATGAGGAACACAGG
TTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAAGTTTAAGTGGCTTG
TATGCATATCGGGAAGACAGGTTTAGTAAAATCTCGCTTGTCATCTGCTA
ATGTATGCCGGAAACTACTCCTATTTCTATTTTTGTAATTTTCTTTTTAG
AACTGCGGCTTGATGGTTGAGGTCACAACTAAATGTACTTGACAAAGGCT
GTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAGTAAAAAAAAAAAAA
AGAAAAAAAAATTAAGAAAAAAAAAACAAATAAAAAATAAAAAAAAAAAA
A
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