CX295445

Overview
NameCX295445
Unique NameCX295445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4232 contig Ccv1_Contig4232:347..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295445 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 63/177 (35.59%), Postives = 87/177 (49.15%), Query Frame = -3 
Query:  146 GHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDG-NYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHGHLPHVSSPAPVANAIQQLLRRRI 673
            GHSV A+IG+LA+I RP LFS L+++G SP + ND   Y GG +   +  +   ME NY  W   F    L         +E      S  P IA   A+ AF +D R  L  V VP  I+Q + D+  P  V +YM +HL   + L+ +   GH PH+S P      I   L+  +
Sbjct:   94 GHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSS-LKQMEARGHCPHMSHPDETIQLIGDYLKAHV 269
The following BLAST results are available for this feature:
BLAST of CX295445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU9.619e-2335.59Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionC05072C08SK PhIFruit1 Citrus clementina cDNA clone C05072C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295445 ID=CX295445; Name=CX295445; organism=Citrus clementina; type=EST; length=702bp
GAGGCTCGAGTTTTTTTTTTTTTTTTTTTTGCAGAAACGATAATTAACCT
AAAATTACAGAACATCGGACAACAGCAATAGAAACCCTACTAACTAGTAC
AGAAGTACAAGCTGAAGAAGAGAGAGCATATATATAAGTGAGTCAAATCC
TTCGACGGAGGAGTTGTTGGATAGCATTAGCGACAGGAGCAGGTGAACTA
ACATGTGGCAAATGTCCATGCGTCGGCAGAAACTCCAGCACAGTCGGGCC
ACCAAGATGGCGTCGCATATACTCCGCAACCGCTGGCGGGACAGACAGAT
CAACAGAGCTCTGAATTATACAAACAGGAACCCTAACAAGGCCCAGCACG
TGCCTTAGGTCAGCTGCAAACGCTGTTCTTGCGACATGCAAGGCAATGTC
AGGCCTCATGCTGAACAAAGTCCTGCTGAATTCTTGGAGAGCCATGTCAG
GCACGTCAGCACCAAGTGCCATTGGTACAAAGCCTGCGACCCAGGATTCA
TAATTGCTCTCCATTCTTCGGAACACTTCTTCCATGTGAGCTGGATCAAT
ACCCCCAATATAATTCCCATCATTCGTGAACCTTGGAGAACCGCCAATGA
GAATGAGTCTTGAGAAAAGGTTGGGACGGTGAATGGCGGCTAAGAGACCA
ATCATAGCCGATACTGAATGACCACAAAGGCGCAACGATCAATTTCAAGG
GC
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