CX295454

Overview
NameCX295454
Unique NameCX295454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.688e-47
Identity = 101/195 (51.79%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   37 VIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACXXXXXXXXXXXXXXXXFR---GLFLICGIXXXXXXXXXXXXXXRQFKKY--XXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRKRED 606
            +I+EL+I +SRLV LGSP+EYA AL+N TVAA+VDERPY+DLFLS+ C F++RGQEFT+SGWGFAFPRDSPLAIDMSTAIL LSE G+LQ+IHDKWL +  C                 R   GLFL+CGI              R F ++                   LQTFL++ DEK D +K ++KRKR D
Sbjct:  708 MIDELNIARSRLVPLGSPKEYAAALQNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWGFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKRKRND 902          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.209e-45
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   43 EELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKAC--XXXXXXXXXXXXXXXXFRGLFLICGIXXXXXXXXXXXXXXRQFKK---YXXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRKRED 606
            +EL+I  SRLV L SPEEYA AL+N TVAA+VDERPYIDLFLSD+C+F++RGQEFT+ GWGFAFPRDSPLA+DMSTAIL LSE GELQ+IHD+WL K  C                  F G+FL+ GI              R F K                     LQTFL+F DEK + TK +LKRKR +
Sbjct:  710 DELNIASSRLVPLASPEEYANALQNGTVAAIVDERPYIDLFLSDYCKFAIRGQEFTRCGWGFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCKDTPEVVVEEAIPSPKSSRLTKLQTFLAFVDEKEEETKRRLKRKRNN 902          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.295e-39
Identity = 94/194 (48.45%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   46 ELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACXXXXXXXXXXXXXXXXFRGLFLICGIXXXXXXXXXXXXXXRQFKK------YXXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRK 597
            EL+I +SRLV LG+PE YA AL++      VAA+VDERPY++LFLS +C + + GQEFTKSGWGFAFPRDSPLAID+STAIL L+ENG+LQRIHDKWL K AC                F GLFLICG+              RQ  K                        LQ FLS  DEK +      KRK
Sbjct:  710 ELNISESRLVPLGTPEAYAKALKDGPSKGGVAAIVDERPYVELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKNACTLENAELESDRLHLKSFWGLFLICGVACLLALFLYFVQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTRLQRFLSLMDEKEESKHESKKRK 903          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.922e-39
Identity = 95/219 (43.38%), Postives = 124/219 (56.62%), Query Frame = 1
Query:   25 IRHEVIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACXXXXXXXXXXXXXXXXFRGLFLICGIXXXXXXXXXXXXXXRQF-KKYXXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRKREDMPSNVYMIEAEPKNGSARIN 666
            +R  +I EL+I  SRLV L SPEEY  AL +      VAAVVDER YI+LFLS+ C+F + GQEFTK+GWGFAFPR+SPLA+D+S AIL LSENG++QRI DKWL +KAC                F GLF++CG+              RQF ++                  + +FLSF  EK +  K++  R+R+        +E    NGS+R N
Sbjct:  693 VRDYLIHELNIHVSRLVPLRSPEEYDKALRDGPGKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKWLLRKACSLQGAEIEVDRLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLSFVKEKEEDAKARSSRERQ--------LEDISANGSSRCN 903          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.534e-32
Identity = 86/200 (43.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query:   43 EELSIPKSRLVALGSPEEYAIALE----NRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWL---RKKACXXXXXXXXXXXXXXXXFRGLFLICGIXXXXXXXXXXXXXXRQFKKY--------XXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRK 597
            +EL +  SRL ALGSPEEY  AL+       VAA+VDERPYI+LFL  + +F+V G EFTKSGWGFAFPRDSPL++D+STAIL LSENG+LQRIHDKWL                        F  LFLICG+               Q+ ++                         LQ+FLSFAD +    +   K K
Sbjct:  711 QELGVAHSRLKALGSPEEYKKALDLGPSKGGVAAIVDERPYIELFLYQNPKFAVVGSEFTKSGWGFAFPRDSPLSVDLSTAILELSENGDLQRIHDKWLASDMSSMSQASELDQDPDRLDVYSFSALFLICGLACIFALAIHACNLFYQYSRHAAEEDPAALQPSASDGSRSLSRRSKLQSFLSFADRREADIRRAAKEK 910          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.343e-28
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 1
Query:   28 RHEVIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSD-HCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACXXXXXXXXXXXXXXXXFRGLFLICGI 420
            R+ +I EL+I  SR+V L   E+Y  AL+       VAA+VDE PYI++ L++ +C+F   GQEFT++GWGFAF RDSPLA+DMSTAIL LSE GEL++IH KWL  K  C                F GLFLICGI
Sbjct:  731 RNYLINELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDELPYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHECSMQISNSEDSQLSLKSFWGLFLICGI 867          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.064e-25
Identity = 65/134 (48.51%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   37 VIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSD-HCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACXXXXXXXXXXXXXXXXFRGLFLICGI 420
            ++ EL+I  SR++ L   EEY  AL+       VAA+VDE PYI   LS+ +C+F   GQEFT++GWGFAF RDSPLA+DMSTAIL L+E G+L++I  KWL     C                F GLFLICG+
Sbjct:  727 LVNELNIAPSRIIPLKDEEEYLSALQRGPRGGGVAAIVDELPYIKALLSNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHECTMQISDTENYQISVQSFWGLFLICGV 860          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.008e-24
Identity = 80/219 (36.53%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   49 LSIPKSRLVALGSPEEYAIALENRT-----VAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKAC-XXXXXXXXXXXXXXXXFRGLFLICGIXXXXXXXXXXXXXXRQFKKY--------XXXXXXXXXXXXXXXXXLQTFLSFADEKVDRTKSKLKRKRE--DMPSNVYMIEAE---PKN 648
            L + +SRLV L S EEY  AL+        VAA+VDE PYI+LFL++   F + G+ F   GWGFAF RDSPLAIDMSTAIL LSE  +LQ I  KWL K  C                 F+GL+L+C                RQF +Y                         +  F+ F DEK +  K   +R  +  + PS+V  ++A+   P+N
Sbjct:  703 LGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKIVGEPFMHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSDDSNNNPSHVGEVQADTEVPRN 921          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   64 SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC-QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW-LRKKACXXXXXXXXXXXXXXXXFRGLFLICGI 420
            S+L   GS EE    L N +++A  DE  Y+   LS +C ++++    F  +G+GFAFPR+SPL  D+S AIL +++  E+Q I +KW +++  C                F GLFLI GI
Sbjct:  706 SKLKPFGSSEECHALLSNGSISAAFDEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQHIENKWFMKQNDCPDPKTALSSNRLSLRSFWGLFLIAGI 826          
BLAST of CX295454 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 1
Query:   34 EVIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC-QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRK-KACXXXXXXXXXXXXXXXXFRGLFLICGI 420
            E+++     +S+L   GS  E      N T+ A  DE  YI + LS +  ++++    F  +G+GF FP+ SPL  D+S AIL +++  E+Q I +KW +K   C                F GLFLI GI
Sbjct:  701 ELLKSQGFDESQLKPFGSAVECDELFSNGTITASFDEVAYIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKKPNNCPDLNTSLSSNHLSLSSFWGLFLIAGI 831          
The following BLAST results are available for this feature:
BLAST of CX295454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GLR32_ARATH1.688e-4751.79Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH1.209e-4552.33Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH1.295e-3948.45Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR36_ARATH4.922e-3943.38Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ1.534e-3243.00Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR34_ARATH1.343e-2851.82Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH1.064e-2548.51Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH2.008e-2436.53Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH2.460e-1437.19Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR27_ARATH5.129e-1233.59Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05072D05SK PhIFruit1 Citrus clementina cDNA clone C05072D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295454 ID=CX295454; Name=CX295454; organism=Citrus clementina; type=EST; length=757bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGTGATTGAGGAGCT
CAGCATTCCAAAATCTAGACTTGTTGCTCTTGGCTCTCCAGAAGAATATG
CGATTGCCCTTGAGAATAGAACTGTTGCAGCTGTCGTCGATGAAAGACCA
TACATAGATCTGTTCCTCTCAGACCATTGCCAGTTTTCAGTTAGAGGCCA
AGAGTTCACAAAAAGCGGCTGGGGATTTGCATTTCCACGAGACTCTCCAT
TAGCAATTGATATGTCAACTGCCATTCTCACTCTATCTGAGAACGGTGAG
CTTCAGAGGATCCATGACAAGTGGCTCAGAAAGAAGGCTTGTAGTTCTGA
GAGCTCTCAGTCTGACTCAGAACAGCTTCAAATTCAAAGCTTCCGGGGAC
TGTTCCTTATCTGTGGGATTGCATGCTTCCTAGCTCTCCTCGCGTACTTC
TGCTTGATGTTACGCCAATTCAAAAAATACTCCGCAGAAGAATCTGCTTC
CTCTGTTCCCAGCAGCTCTCGTTCTGCACGCCTCCAAACTTTTTTATCAT
TTGCGGATGAAAAGGTAGACAGAACAAAGAGCAAGCTAAAGAGAAAACGT
GAAGATATGCCATCAAATGTTTATATGATCGAAGCTGAGCCAAAAAATGG
ATCAGCGAGAATAAATAGGGATATTTCTCAGGAGAGGGAGCAGTATAATA
ATGAAACTTGGCTCCATTAATGGTCAGTTCCATATGGTCAATAATGCTTT
TCTGAAT
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