CX295460

Overview
NameCX295460
Unique NameCX295460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295460_ssr104 microsatellite CX295460_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295460_ssr638 microsatellite CX295460_ssr638:638..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.960e-55
Identity = 103/132 (78.03%), Postives = 115/132 (87.12%), Query Frame = 1
Query:  229 IMQETKDIIGEGEAEED--RVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            I++      G GE +E   R L ++EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD++SNEKGLLL+FEDR GKPWRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF RGVG+ A+GRLFIDW
Sbjct:    7 IVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDW 138          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGD-LAKGRLFIDW 618
            G GEAE       +EKEHMFDKVVTPSDVGKLNRLVIPKQ+AEKYFPLD+++NEKGLLLNFEDR GKPWRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF RG+GD  A+ RLFIDW
Sbjct:   83 GGGEAEV------VEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDW 198          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.238e-50
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 1
Query:  268 AEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAK-GRLFIDW 618
            AEE+      ++EHMFDKVVTPSDVGKLNRLVIPKQHAE++FPLDSSSNEKGLLLNFED  GK WRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGD+VSF R VGD  +  RLFIDW
Sbjct:   20 AEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDW 137          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.229e-50
Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            G G  E+  V+   EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDS++NEKGLLL+FEDR GK WRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF RG  +  + RLFIDW
Sbjct:   94 GGGGGEDVEVI---EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDW 211          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.231e-49
Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 1
Query:  298 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLA-KGRLFIDW 618
            EKEHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLDSS+N+ G LLNF+DRNGK WRFRYSYWNSSQSYVMTKGWSRFVK+KKLDAGD+VSF RG+GD + + +L+IDW
Sbjct:   51 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDW 158          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = 1
Query:  292 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            S+E+EHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLD+S+   + KGLLLNFEDR+G  WRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGD+VSF R      K +L+IDW
Sbjct:   16 SMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR--DSCNKDKLYIDW 125          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y1071_ORYSJ (Putative B3 domain-containing protein Os10g0537100 OS=Oryza sativa subsp. japonica GN=Os10g0537100 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.137e-45
Identity = 90/138 (65.22%), Postives = 107/138 (77.54%), Query Frame = 1
Query:  253 IGEGEAEEDRVLIS---LEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE-------------KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            +  GE + +R   +   +EKEHMF+KVVTPSDVGKLNRLVIPKQHAE+YFPLD+++               KGL+L+FEDR GK WRFRYSYWNSSQSYVMTKGWSRFVK+K+L AGD VSF RG+GD A+GRLFID+
Sbjct:   12 VAGGEEDSERGAAAWAVVEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRLFIDF 149          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y2608_ARATH (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 80/110 (72.73%), Postives = 90/110 (81.82%), Query Frame = 1
Query:  298 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSN---EKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            EKE +F+K +TPSDVGKLNRLVIPKQHAE+YFPL +++    EKGLLL FED  GKPWRFRYSYWNSSQSYV+TKGWSR+VK+K LDAGDVV FHR   D   GR FI W
Sbjct:   33 EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSD--GGRFFIGW 140          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 81/135 (60.00%), Postives = 97/135 (71.85%), Query Frame = 1
Query:  235 QETKDIIGEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGV-------GDLAKGRLFIDW 618
            QE  +I        +    S  +EHMFDKV+TPSDVGKLNRLVIPKQHAE +FPL+   N+ G +L+F+D+NGK WRFRYSYWNSSQSYVMTKGWSRFVK+KKL AGD VSF+RG         +  +  +FIDW
Sbjct:    5 QELAEIRASSSDHTNYFYSSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED--NQNGTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRGYIPDDNAQPERRRKIMFIDW 137          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y5625_ARATH (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 1
Query:  301 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL----------DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            KE +F+K +TPSDVGKLNRLVIPKQHAEKYFPL          D+SS+EKG+LL+FED +GK WRFRYSYWNSSQSYV+TKGWSRFVKDK+LD GDVV F R   D    RLFI W
Sbjct:   42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSD--SRRLFIGW 155          
The following BLAST results are available for this feature:
BLAST of CX295460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y3209_ORYSJ1.960e-5578.03B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
Y2835_ORYSJ1.717e-5181.15B3 domain-containing protein Os02g0683500 OS=Oryza... [more]
NGA1_ARATH3.238e-5081.36B3 domain-containing transcription factor NGA1 OS=... [more]
Y4814_ORYSJ4.229e-5078.51B3 domain-containing protein Os04g0581400 OS=Oryza... [more]
NGA3_ARATH1.231e-4983.33B3 domain-containing transcription factor NGA3 OS=... [more]
NGA2_ARATH1.408e-4578.57B3 domain-containing transcription factor NGA2 OS=... [more]
Y1071_ORYSJ3.137e-4565.22Putative B3 domain-containing protein Os10g0537100... [more]
Y2608_ARATH1.969e-3972.73B3 domain-containing protein At2g36080 OS=Arabidop... [more]
NGA4_ARATH2.572e-3960.00B3 domain-containing transcription factor NGA4 OS=... [more]
Y5625_ARATH3.359e-3969.83B3 domain-containing protein At5g06250 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC05072D11SK PhIFruit1 Citrus clementina cDNA clone C05072D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295460 ID=CX295460; Name=CX295460; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGCCATTCCCTTCAGTCCAGGGCTTAAGAGAGTTCACTGATGACT
ATCTGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACA
ACAAACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACC
ACAACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGC
TGCAGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATA
TTATTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAG
AAGGAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCT
GAATCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAG
ACTCTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAAT
GGAAAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTA
CGTCATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATG
CCGGTGACGTTGTTTCCTTTCATAGGGGTGTTGGTGATTTGGCTAAAGGT
CGTCTTTTCATTGACTGGAGGAGAAGATCCCATCCTCCTGCTGCTGCTGC
TGCTTCGTTTTCTCGCCACCTGCCATTTTACCGGTCCATTCCTTGGAATC
CTTTGCTGATG
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