CX295464

Overview
NameCX295464
Unique NameCX295464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:945..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295464 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 47/108 (43.52%), Postives = 56/108 (51.85%), Query Frame = 3 
Query:    6 LRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDCD----PVVDSSPNEDEQWSY 317
            LRVMQHEP+LMFETLKHRA E+CGQ                 +           Q F +MPYLV  ++C L A+ N  G YYC+G+D       V  S   EDE WSY
Sbjct:  633 LRVMQHEPQLMFETLKHRALEFCGQH------------DDDSVVNAGVLANSLAQSFDNMPYLVSSTTCCLNALTNNNGFYYCSGDDFSADTVSVATSVAGEDENWSY 728
The following BLAST results are available for this feature:
BLAST of CX295464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPE1_PEA1.019e-1643.52Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05072E03SK PhIFruit1 Citrus clementina cDNA clone C05072E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295464 ID=CX295464; Name=CX295464; organism=Citrus clementina; type=EST; length=481bp
GAGGCCTCCGGGTGATGCAGCACGAGCCCGAGCTCATGTTTGAGACCCTC
AAACACCGTGCTGAGGAATATTGTGGACAGGAGCATGGTAGTAATGGTGG
GGATGGTGATACTGATGATTACGATCACGGCATGGCTAATAATTCTGCTT
TAGCTAGCAGCCTTGCTCAGTACTTTCACAGCATGCCATATCTTGTGGTG
CCATCCTCTTGTTCTTTGACTGCTATCAATAATGGTGGTGGGTTATACTA
TTGCAACGGGGAGGATTGCGATCCTGTTGTTGATTCTTCTCCAAATGAGG
ATGAGCAGTGGTCATACTGCTATGCTTAGATGTGTATTCTTAGTATCACC
TGTCACCCTATCGAAATGCTTCATCTAATCCTTGAGCTTGTCTTGTTGCA
AGTTTTTATTCCGTAATTTTAATTTCATTGTCTATTTTAATTTTTAGATT
TTCATTGCAAAAGATGGAAGCAGTTGAACAT
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