CX295471

Overview
NameCX295471
Unique NameCX295471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295471 vs. ExPASy Swiss-Prot
Match: PUS4_ARATH (RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1
Query:  121 DSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 357
            D AIIV+NKPHG+ VQGG GI+ SIDELAA+CL +D SE PRLVHRLDRD SG+LV+ RTQT+ATVLHSIFREKT  AS
Sbjct:  189 DPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGAS 267          
BLAST of CX295471 vs. ExPASy Swiss-Prot
Match: PUS4_ORYSJ (RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  121 DSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSA 354
            D AIIV+NKP GMPVQGG+GI+ SID LA+     + SE PRLVHRLDRD SGILV+GR Q S ++LH+IFREKT  A
Sbjct:  182 DEAIIVVNKPPGMPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA 258          
BLAST of CX295471 vs. ExPASy Swiss-Prot
Match: PUS3_ARATH (RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  121 DSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 339
            DSAIIV+NKP  +PV+G + I  S+D LAA  L++   E PRLVHRLDR++SG+LVMGRT+ S   LHS+F +
Sbjct:  185 DSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSD 257          
BLAST of CX295471 vs. ExPASy Swiss-Prot
Match: PUS3_ORYSJ (RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  121 DSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 333
            DSAI+V+NKP  +P++G + +  S+D LAA  L+Y   E P+LVHRLDR+SSG+L+ GRT+ S T LH +F
Sbjct:  183 DSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLF 253          
The following BLAST results are available for this feature:
BLAST of CX295471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PUS4_ARATH1.944e-2775.95RNA pseudourine synthase 4, mitochondrial OS=Arabi... [more]
PUS4_ORYSJ6.057e-2166.67RNA pseudourine synthase 4, mitochondrial OS=Oryza... [more]
PUS3_ARATH5.306e-1757.53RNA pseudourine synthase 3, mitochondrial OS=Arabi... [more]
PUS3_ORYSJ8.472e-1553.52RNA pseudourine synthase 3, mitochondrial OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC05072E10SK PhIFruit1 Citrus clementina cDNA clone C05072E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295471 ID=CX295471; Name=CX295471; organism=Citrus clementina; type=EST; length=652bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTTGTATAAGGTTCTCAATTTT
AACTCTTCCATGGTTGGTGTTTCACTAACTCACTTCTCTCTCATAACCCC
GCACGGCTTTCCAAATATAGGATTCAGCCATTATCGTTATCAATAAACCT
CATGGGATGCCTGTACAAGGGGGCATAGGAATTAGAAGAAGTATCGATGA
ACTGGCTGCTACTTGTTTAACTTATGATTACTCAGAACCGCCACGACTGG
TGCATAGACTTGACAGAGACAGTAGTGGCATCTTGGTGATGGGGAGGACG
CAAACAAGTGCAACAGTTCTGCATTCTATTTTCCGTGAGAAAACATTTAG
TGCATCAAAAGAGGTAAATCTCCCCTGTTCTCATTTATGCTTTCTTCAAT
AACAGCCTCACATGTGTATGAGAAATGCATTGCTGTTAGTTCTGGGATAA
TTACAGTTGAACGTGTTATGTATAAGGATAATGACAACGAGAAAAGAATC
TTGCAAAGATGGTATTGGGCCCTTGTTGTTGGAACTCCAAGGTGCTCGAA
GGGGGTGATTTCAGCACCACTAAGAAAGGTGGTGGTGGACAATGGAAAGT
CCGATCGAATCACAGTGGTTAACAATGATCAAATTATGTCAGCTCAGCAT
GC
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