CX295472

Overview
NameCX295472
Unique NameCX295472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295472_ssr352 microsatellite CX295472_ssr352:352..363. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295472 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  434 QKAAKRVQDALSEKQQELERVKEFISDNTNLINLIQKLPEELHHDIMVPFGKAAFFPGCLIHTNEFMVLLGEGYYAER 667
            Q+  K+ +  + E Q  +E +K   +D   LI+ +Q LP+ L   IMVP GK AFF G L +TNE ++LLG+ Y+A+R
Sbjct:    4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKR 81
The following BLAST results are available for this feature:
BLAST of CX295472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RMP_DICDI7.672e-1142.31RNA polymerase II subunit 5-mediating protein homo... [more]
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Properties
Property NameValue
Genbank descriptionC05072E11SK PhIFruit1 Citrus clementina cDNA clone C05072E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295472 ID=CX295472; Name=CX295472; organism=Citrus clementina; type=EST; length=669bp
GAGGCAGTAGCCCCTGTCTCAGGCCTCACTCCTCACAACCCTTCTCGCTT
AGTGACATGCACGATGCTGGCATAGAGCCTGCACAGTAGCAGCCGAGCAC
GGCAGCACCAAGCCACTAACAGCTCCTTTCTCTCTCAACTCACTCTCACA
CGCATGCAGCATTAAGCCAACATCACCAACCCCCCTTTCTCTCGCGCTCG
CTCTGACACTCCATCTTCGTCACCATATCACCCTCTGGTCTTAACTATTT
GCCATCGCAGCCTCTTTCAACTGTTGCGATCTCAATGGCTGTCGGAGACA
GGCCTGTTCGGTAAACTTAACAGATCAAAACCCACTTCAGAGAATCAATC
AAATCAATCAATCAGTAATGGAAGAGCCAACAGCGAAAGGAACAGTGACT
TCGATCTCGTCCATGTTTCCAGTCGACGACGTGCAGAAAGCAGCTAAGCG
CGTGCAGGACGCGCTGTCGGAGAAGCAGCAGGAGCTTGAGCGAGTTAAGG
AATTCATCAGCGATAACACAAACCTCATTAACCTCATCCAGAAACTTCCC
GAAGAACTTCACCACGATATCATGGTTCCTTTTGGAAAAGCAGCATTTTT
TCCTGGGTGTTTGATACATACCAATGAGTTTATGGTTCTTTTGGGAGAAG
GGTATTATGCAGAGAGAAC
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