CX295483
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 5.215e-55 Identity = 116/225 (51.56%), Postives = 148/225 (65.78%), Query Frame = 3 Query: 12 PNSARGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSR 671 P R N+ PSSPDSS+LTREG++K N+DP A+G SRVLQGQE+STLR E S E D E SVVW S DD+K+DVVS SRRYGSENW+ RHEP YTDLLSGFG N DPSHG PF D ++P ++ + D EGKF+ +A W ++ SG SLK+ ES KVP D + Q R NV+Y +YP+LNG E++ GNW + P + +E +++ Sbjct: 409 PKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNWPIRPRALNYYEEVVNAQ 626
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17 Identity = 68/207 (32.85%), Postives = 106/207 (51.21%), Query Frame = 3 Query: 24 RGNMLPSSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWL 623 R N P+SP+S +LT+E ++K++ DP+ A + S VLQGQE TLR N E SN+SD TA K ++W PS + K ++ +R +NW+ GR E + D+ SG + D S GF D P R K+ +G + P+ + PSL + ES+ ++ ++++ + YG D P R E + +WL Sbjct: 376 RPNAPPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLTE--SNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSWL 576
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15 Identity = 65/226 (28.76%), Postives = 104/226 (46.02%), Query Frame = 3 Query: 21 ARGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVL---------DQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHS 668 AR N+L SSPD S + +E +SK+ + S G R QE LR F + SNE +T++K +W + EK +V S R GS++W+ R + +++LSGF D + SS F + +S DQ N+ WSLMP + + N + D+ R N ++GG G + L + ++ WL P S+ ++++ S Sbjct: 396 ARPNVLASSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEKNNV-SVQRELGSQSWMQMRRPDGS-SEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGWLGHIEPSSHIDDASSS 612
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13 Identity = 63/222 (28.38%), Postives = 98/222 (44.14%), Query Frame = 3 Query: 24 RGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 659 R N DSS + +E ++K+ V+ S G R Q QE +T + F S+E ++A+KS++ P D EK + + GS+ W+ + E Y+++LSGF D GF S V DQ+ N+ WS MP L + + N + +Q V Q GN ++G G Y L G E G W +P S+ +++ Sbjct: 398 RPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGWFGHMMPNSHMDDT 612
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11 Identity = 62/222 (27.93%), Postives = 97/222 (43.69%), Query Frame = 3 Query: 24 RGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 659 R N DSS + +E ++K+ V+ S G R Q QE +T + F S+E ++A+KS++ P D EK + + GS+ + + E Y+++LSGF D GF S V DQ+ N+ WS MP L + + N + +Q V Q GN ++G G Y L G E G W +P S+ +++ Sbjct: 398 RPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGRMQMSKPES-YSEMLSGFQPPKDVQIPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGWFGHMMPNSHMDDT 612 The following BLAST results are available for this feature:
BLAST of CX295483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295483 ID=CX295483; Name=CX295483; organism=Citrus clementina; type=EST; length=678bpback to top |