CX295483

Overview
NameCX295483
Unique NameCX295483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig414 contig Ccv1_Contig414:87..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.215e-55
Identity = 116/225 (51.56%), Postives = 148/225 (65.78%), Query Frame = 3
Query:   12 PNSARGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSR 671
            P   R N+ PSSPDSS+LTREG++K N+DP  A+G SRVLQGQE+STLR    E  S E D  E SVVW  S DD+K+DVVS SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E++ GNW + P   + +E   +++
Sbjct:  409 PKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNWPIRPRALNYYEEVVNAQ 626          
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 68/207 (32.85%), Postives = 106/207 (51.21%), Query Frame = 3
Query:   24 RGNMLPSSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWL 623
            R N  P+SP+S +LT+E ++K++ DP+ A  +  S VLQGQE  TLR N  E  SN+SD TA K ++W PS +  K   ++  +R   +NW+  GR E  + D+ SG  +  D S GF     D  P R    K+    +G     + P+  +   PSL + ES+ ++     ++++    +  YG   D P     R E +  +WL
Sbjct:  376 RPNAPPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLTE--SNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSWL 576          
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 65/226 (28.76%), Postives = 104/226 (46.02%), Query Frame = 3
Query:   21 ARGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVL---------DQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHS 668
            AR N+L SSPD S + +E +SK+  + S   G  R    QE   LR  F +  SNE +T++K  +W    + EK +V S  R  GS++W+   R +   +++LSGF    D  +  SS F   +   +S           DQ    N+    WSLMP      + + N    +   D+    R  N ++GG G +  L  + ++     WL    P S+ ++++ S
Sbjct:  396 ARPNVLASSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEKNNV-SVQRELGSQSWMQMRRPDGS-SEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGWLGHIEPSSHIDDASSS 612          
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 63/222 (28.38%), Postives = 98/222 (44.14%), Query Frame = 3
Query:   24 RGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 659
            R N      DSS + +E ++K+ V+ S   G  R  Q QE +T +  F    S+E ++A+KS++ P   D EK +      + GS+ W+   + E  Y+++LSGF    D     GF S               V     DQ+   N+    WS MP    L + + N  + +Q   V  Q  GN ++G  G Y  L G   E   G W    +P S+ +++
Sbjct:  398 RPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGWFGHMMPNSHMDDT 612          
BLAST of CX295483 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 62/222 (27.93%), Postives = 97/222 (43.69%), Query Frame = 3
Query:   24 RGNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 659
            R N      DSS + +E ++K+ V+ S   G  R  Q QE +T +  F    S+E ++A+KS++ P   D EK +      + GS+  +   + E  Y+++LSGF    D     GF S               V     DQ+   N+    WS MP    L + + N  + +Q   V  Q  GN ++G  G Y  L G   E   G W    +P S+ +++
Sbjct:  398 RPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGRMQMSKPES-YSEMLSGFQPPKDVQIPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGWFGHMMPNSHMDDT 612          
The following BLAST results are available for this feature:
BLAST of CX295483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ARFB_ARATH5.215e-5551.56Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ1.483e-1732.85Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ5.276e-1528.76Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI4.938e-1328.38Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFW_ORYSJ2.075e-1127.93Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionC05072F10SK PhIFruit1 Citrus clementina cDNA clone C05072F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295483 ID=CX295483; Name=CX295483; organism=Citrus clementina; type=EST; length=678bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAAACATGTTGCCCTCATCACCT
GACTCGTCTGTTCTCACTAGGGAAGGTTCATCTAAACTAAATGTAGACCC
TTCATCAGCTACTGGATTTTCAAGGGTCTTGCAAGGTCAAGAATTCTCGA
CCTTGAGAGGCAATTTTGCAGAGAGAGAAAGTAACGAGTCTGACACTGCT
GAAAAGTCTGTTGTGTGGCCACCTTCACTTGATGATGAGAAGATTGATGT
GGTGTCTGCTTCAAGAAGATATGGATCAGAGAACTGGGTGCCACCAGGGA
GGCATGAACCAGTGTACACTGATTTGCTGTCAGGATTTGGAGCAAATGCT
GATCCCTCCCATGGGTTTAGTTCACCTTTTGCTGATGCAGTTCCAGTAAG
AAAAAGTGTACTGGATCAAGAGGGGAAGTTTAACTTGGTTGCTCGACCAT
GGTCCTTGATGCCCTCTGGTCCATCACTTAAAATGCCAGAGTCTAATGCA
AAAGTTCCGGTACAAGGTGGTGATGTAAATTATCAAGTGCGTGGTAATGT
TAGATATGGCGGGTTTGGTGACTATCCCATGCTTAACGGCAATAGAGTTG
AGCACTCACATGGAAACTGGTTAATGCCCCCCCTTCCCCCTTCTAATTTT
GAAAATTCAGCTCATTCGAGAGAGTTGA
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