CX295493

Overview
NameCX295493
Unique NameCX295493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:445..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.556e-51
Identity = 99/164 (60.37%), Postives = 116/164 (70.73%), Query Frame = 2
Query:   20 SDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            +DYC  DPNYPC  GK Y+GRGP+QLTWNYNY +CG  +G   DLLNNPDLLAT+      +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  164 ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIG--VDLLNNPDLLATDP----TISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.654e-51
Identity = 96/157 (61.15%), Postives = 117/157 (74.52%), Query Frame = 2
Query:   17 SSDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 475
            SS+YC   P YPC  GK YYGRGP+QL+WNYNY  CGE L    +LL NPDL+AT+    RVLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:   93 SSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALR--VNLLGNPDLVATD----RVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.009e-50
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 2
Query:   17 SSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            +SDYC+P+  +PC    +YYGRGP+QL+WNYNY  CG  +G   DLLNNPDL+A +     V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  177 ASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIG--VDLLNNPDLVAND----AVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.009e-50
Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  155 REQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.317e-50
Identity = 95/170 (55.88%), Postives = 120/170 (70.59%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  166 REQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.317e-50
Identity = 96/164 (58.54%), Postives = 117/164 (71.34%), Query Frame = 2
Query:   20 SDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            S YC  DPNYPC  GK Y+GRGP+QL+WNYNY +CG  +G   DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  167 SSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIG--VDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.720e-50
Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  153 REQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.247e-50
Identity = 93/170 (54.71%), Postives = 120/170 (70.59%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  155 REQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.006e-50
Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  161 REQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.538e-50
Identity = 93/170 (54.71%), Postives = 119/170 (70.00%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  159 REQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
The following BLAST results are available for this feature:
BLAST of CX295493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_THECC1.556e-5160.37Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_CARPA2.654e-5161.15Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH1.009e-5059.62Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_SOLTU1.009e-5055.29Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_TOBAC1.317e-5055.88Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI1.317e-5058.54Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_SOLTU1.720e-5054.12Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU2.247e-5054.71Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC5.006e-5055.29Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC6.538e-5054.71Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionC05072G08SK PhIFruit1 Citrus clementina cDNA clone C05072G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295493 ID=CX295493; Name=CX295493; organism=Citrus clementina; type=EST; length=675bp
GAGGGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTC
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAA
TCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCA
AGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGC
CACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGC
CGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAA
TTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTC
TTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGA
TTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGT
GATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTA
ATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAACTGTTACGC
TCTTATTGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGT
CTTCTCCAAAAAAAAAAAAAAAAAA
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