CX295494

Overview
NameCX295494
Unique NameCX295494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295494_ssr571 microsatellite CX295494_ssr571:571..582. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA-----ILRDR*MF 165
            KN+GLYGERVGALSIVCK+ADVAGRVESQ+KLVIRPMYS+PPIHGA     ILRD+ +F
Sbjct:  295 KNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHGASIVAVILRDKNLF 353          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA-----ILRDR*MF 165
            KN+GLYGERVGALSIVC +ADVA RVESQ+KLVIRPMYSNPPIHGA     IL+D  MF
Sbjct:  253 KNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDSAMF 311          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGALSIVCKTADVA +VESQ+KLVIRPMYS+PP+HGA
Sbjct:  251 KNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPPLHGA 296          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGALSIVCK+ADVA +VESQVKLV+RPMYS+PPIHGA
Sbjct:  251 KNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHGA 296          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHG-----AILRDR*MF 165
            KN+GLYGERVGALSIV K+ADV+ RVESQ+KLVIRPMYS+PPIHG     AIL+DR ++
Sbjct:  264 KNMGLYGERVGALSIVSKSADVSSRVESQLKLVIRPMYSSPPIHGASIVAAILKDRDLY 322          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK AD A RVESQ+K++IRPMYSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_MACFA (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK AD A RVESQ+K++IRPMYSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK AD A RVESQ+K++IRPMYSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK A+ A RVESQ+K++IRPMYSNPPI+GA
Sbjct:  279 KNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK A+ A RVESQ+K++IRPMYSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGA 324          
The following BLAST results are available for this feature:
BLAST of CX295494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AAT3_ARATH1.461e-1879.66Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATC_ORYSJ6.140e-1777.97Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AATC_DAUCA1.047e-1686.96Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AAT2_ARATH1.047e-1686.96Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AAT1_MEDSA5.198e-1672.88Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AATM_PONAB1.849e-1373.91Aspartate aminotransferase, mitochondrial OS=Pongo... [more]
AATM_MACFA1.849e-1373.91Aspartate aminotransferase, mitochondrial OS=Macac... [more]
AATM_HUMAN1.849e-1373.91Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATM_BOVIN1.849e-1373.91Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATM_PIG2.414e-1371.74Aspartate aminotransferase, mitochondrial OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionC05072G09SK PhIFruit1 Citrus clementina cDNA clone C05072G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295494 ID=CX295494; Name=CX295494; organism=Citrus clementina; type=EST; length=707bp
AGGAAGAACTTGGGTCTTTATGGGGAACGTGTTGGGGCTCTAAGCATTGT
CTGCAAGACAGCTGATGTGGCAGGCAGGGTTGAGAGCCAGGTGAAACTTG
TGATCAGGCCCATGTATTCAAATCCACCCATTCACGGCGCCATTTTGAGG
GACAGGTAAATGTTCCAAGCTTTTCTTCATACCTGGCTCAATTAACTTGA
AAAAGAAGAGTATGAACTGAGAAGCTAAACTATTGAAAGCAGAATTCTTT
ATATTCTTTTCTCAAGGGGAGCTTATATTAATCATCAAAACCGATCAAGT
TATAGGCAGATAATTAACTGGATACAATGTTGTCACTGTGTACATTTTAA
CTGGATGACAATGGAAAACATCAGTGACATTCTTTCTGGAAATCATGCTT
TCTCAAAATATTCCTTGAGTTTTTGACTGCTTCATGATCAGGGACTTGTT
CAATGAGTGGACTTTTGAGTTGAAGGCAATGGCTGATCGCATCATCAGCA
CGAGGCAGAAACTTTCTGATGCCTTACGTGCTAGATGTAAGAGCATTTGT
TGAGTTTTATCTGTTTTCCGTATTTATTTATTTTCTCATATGCGTATGTC
AGCTCTATTATGATCGTTCCCGTCCCTTAATTGATCATGCCGTAAGCGTC
CAGTTTCTTAAATTGCGTCCTCAACTTCTGTGAGTTCAGAACATCCATTA
CCTCTCT
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