CX295496

Overview
NameCX295496
Unique NameCX295496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:432..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.528e-51
Identity = 99/164 (60.37%), Postives = 116/164 (70.73%), Query Frame = 3
Query:   33 SDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            +DYC  DPNYPC  GK Y+GRGP+QLTWNYNY +CG  +G   DLLNNPDLLAT+      +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  164 ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIG--VDLLNNPDLLATDP----TISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.606e-51
Identity = 96/157 (61.15%), Postives = 117/157 (74.52%), Query Frame = 3
Query:   30 SSDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 488
            SS+YC   P YPC  GK YYGRGP+QL+WNYNY  CGE L    +LL NPDL+AT+    RVLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:   93 SSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALR--VNLLGNPDLVATD----RVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.584e-51
Identity = 96/171 (56.14%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  155 REQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 9.905e-51
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 3
Query:   30 SSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            +SDYC+P+  +PC    +YYGRGP+QL+WNYNY  CG  +G   DLLNNPDL+A +     V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  177 ASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIG--VDLLNNPDLVAND----AVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.905e-51
Identity = 97/171 (56.73%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  166 REQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.905e-51
Identity = 99/171 (57.89%), Postives = 121/171 (70.76%), Query Frame = 3
Query:   12 REVGAASSDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE+   SS YC  DPNYPC  GK Y+GRGP+QL+WNYNY +CG  +G   DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  161 RELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIG--VDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.294e-50
Identity = 94/171 (54.97%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  153 REQGSPG-DYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.689e-50
Identity = 95/171 (55.56%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  155 REQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.764e-50
Identity = 96/171 (56.14%), Postives = 122/171 (71.35%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  161 REQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.916e-50
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+   DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  159 REQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
The following BLAST results are available for this feature:
BLAST of CX295496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_THECC1.528e-5160.37Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_CARPA2.606e-5161.15Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_SOLTU7.584e-5156.14Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH9.905e-5159.62Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_TOBAC9.905e-5156.73Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI9.905e-5157.89Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_SOLTU1.294e-5054.97Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.689e-5055.56Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC3.764e-5056.14Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC4.916e-5055.56Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionC05072G11SK PhIFruit1 Citrus clementina cDNA clone C05072G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295496 ID=CX295496; Name=CX295496; organism=Citrus clementina; type=EST; length=670bp
GAGGGCTTTACAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCT
AACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCAC
TTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGG
ACTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGA
GTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACC
AAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAA
ATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATA
ATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAA
CCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTG
GTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATG
GCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAA
TAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAAC
TAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGGATCCACA
TGGATCAATGAGTCTTCTCC
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