CX295509

Overview
NameCX295509
Unique NameCX295509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1106..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  351 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.514e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  356 KKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.897e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  355 KKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  355 KRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  355 KRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            K+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  354 KRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            K+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  354 KRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            K+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  354 KRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K+S EE +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  355 KRSAEEGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            KK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  353 KKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
The following BLAST results are available for this feature:
BLAST of CX295509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CHS2_CITSI6.965e-17100.00Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR8.514e-1594.74Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA1.897e-1492.11Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS4_SORBI9.413e-1487.18Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS2_MAIZE9.413e-1487.18Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHS1_HORVU9.413e-1482.93Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHSY_ORYSJ1.229e-1382.93Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI1.229e-1382.93Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS7_SORBI1.229e-1387.18Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS2_RUTGR1.606e-1385.37Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05072H12SK PhIFruit1 Citrus clementina cDNA clone C05072H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295509 ID=CX295509; Name=CX295509; organism=Citrus clementina; type=EST; length=393bp
GGAAGAAGTCTGTTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTTGAT
TGGGGTGTGCTGTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGT
GCTGCACAGTGTCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGT
TTAGTAGTTCAGTAACTTTATGTTGTATGCTTTCACAGTTGAATTATTGG
TTGATCGTGTGAAGGTTTAGTTTTGTCAATTGAGTTTAAGGCATCGTGCC
TTTTCTCTTATGACGTCACCAAACCTGGGCAACGCTTTGTGTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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