CX295511

Overview
NameCX295511
Unique NameCX295511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13200 contig Ccv1_Contig13200:995..1692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_RABIT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L  VL  LV  HQ  R  VTDEMV  FM  R L
Sbjct:  335 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_RAT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:  335 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_PONAB (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:  332 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_MOUSE (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct:  335 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_HUMAN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:  331 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_BOVIN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 8.178e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+++Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:  336 KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_DICDI (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.164e-31
Identity = 67/136 (49.26%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPALI S FFPALQG   KMSASD NSA+Y++D+          +AFSGG  + E   K GA+L VDI  +YL+F LEDD +L+ I   Y  G M+TGE+KQ L  ++ +++ RH+ ARA +TDE++  FM++R L
Sbjct:  263 KPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_YEAST (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=WRS1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 408
            KPAL+ S FFPALQG T KMSASD  +AI++TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct:  277 KPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYWC_SCHPO (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=wrs1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 393
            KPAL+ S FFPALQG   KMSAS  +SAI++TD+          +AFSGG  ++E+HR+ G N +VD+  +YLSFFL+DD +L+ +   Y AG + TGE+K    K+L + V   Q AR+ V +  +D FM
Sbjct:  257 KPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEMKGECIKLLQQFVSDFQAARSKVDEATLDMFM 387          
BLAST of CX295511 vs. ExPASy Swiss-Prot
Match: SYW_ENCCU (Tryptophanyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU11_0530 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 55/133 (41.35%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 399
            KP+ I  S  P L+G   KMSASDPNS+IY+ D+          YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct:  250 KPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382          
The following BLAST results are available for this feature:
BLAST of CX295511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SYWC_RABIT1.262e-3554.41Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryct... [more]
SYWC_RAT2.152e-3555.15Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattu... [more]
SYWC_PONAB6.262e-3552.94Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo... [more]
SYWC_MOUSE6.262e-3554.41Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus m... [more]
SYWC_HUMAN6.262e-3552.94Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo ... [more]
SYWC_BOVIN8.178e-3552.94Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos t... [more]
SYWC_DICDI7.164e-3149.26Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dicty... [more]
SYWC_YEAST3.328e-2847.79Tryptophanyl-tRNA synthetase, cytoplasmic OS=Sacch... [more]
SYWC_SCHPO2.385e-2645.80Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schiz... [more]
SYW_ENCCU2.915e-2441.35Tryptophanyl-tRNA synthetase OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionC05073A02SK DroRLeaf1 Citrus clementina cDNA clone C05073A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295511 ID=CX295511; Name=CX295511; organism=Citrus clementina; type=EST; length=692bp
AAGCCTGCATTAATTGAGTCGTCATTTTTCCCTGCATTGCAGGGGGAGAC
AGGAAAAATGTCAGCTAGTGATCCTAATTCTGCCATATATGTTACTGATT
CTGCGAAGGCTATTAAGAACAAGATAAACAAGTATGCATTTTCTGGCGGA
CAAGAAAGTGTGGAATTACATAGAAAATTAGGGGCAAATCTTGAGGTAGA
TATACCAGTAAAATATCTAAGTTTTTTCCTAGAGGATGATGCAGAACTAG
AACACATTAAAAAGGAGTATGGTGCAGGTGGCATGCTAACGGGGGAAGTT
AAGCAACGCCTTGCTAAAGTTTTGACTGAATTGGTGGAAAGACACCAGGT
GGCTCGTGCTGCTGTAACTGATGAGATGGTCGATGCATTTATGGCAGTGA
GACCCCTTCCCAATATGTTCGACTAGTGTTGAGATGATGAACTTGGGCGG
ATTTCCATCCATTCTATTTCCCAACCTGAAACATGCATGAGAGATGTTTC
AGCTTCAAGCTACACATGATGGATTGGATTCCTTTTTTACCAATTTCTTT
TCAGAATATCAGTTAAAATAGAGTTTTCCAATGGGACCTTAGAATTAAAG
ACGTGTAAGATAATGTCAGATGGGATGAGGCTGATTCTCTTGCATATCAT
AATTTGACACCTAGTGGTTCACTTGTTTGAGCACACGCTGTT
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