CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295519_ssr168 microsatellite CX295519_ssr168:168..183. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295519_ssr75 microsatellite CX295519_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10917 contig Ccv1_Contig10917:63..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.477e-68
Identity = 126/136 (92.65%), Postives = 134/136 (98.53%), Query Frame = 1
Query:  262 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSIRVDDK+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVS
Sbjct:    3 GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVS 138          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.170e-65
Identity = 123/136 (90.44%), Postives = 129/136 (94.85%), Query Frame = 1
Query:  259 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS+ VDDKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAV 136          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.996e-65
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = 1
Query:  268 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAV 137          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.404e-65
Identity = 119/137 (86.86%), Postives = 131/137 (95.62%), Query Frame = 1
Query:  259 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            M  YRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+ +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVS
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVS 137          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.868e-63
Identity = 118/136 (86.76%), Postives = 128/136 (94.12%), Query Frame = 1
Query:  259 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            M  YR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+++VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAV 136          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.440e-63
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 1
Query:  265 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDV 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.435e-63
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 1
Query:  259 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            MG YR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+++ VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAV 136          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            DD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            DD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            DD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 134          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC1.477e-6892.65Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH1.170e-6590.44Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ1.996e-6592.48Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL3.404e-6586.86Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1B_ARATH1.868e-6386.76Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE2.440e-6388.06Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11D_LOTJA5.435e-6386.03Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11B_RAT7.098e-6389.23Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE7.098e-6389.23Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN7.098e-6389.23Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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