CX295526

Overview
NameCX295526
Unique NameCX295526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:1..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295526 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 58/196 (29.59%), Postives = 82/196 (41.84%), Query Frame = 3
Query:  195 AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXXA----VELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPAQSML 752
            A   S G L LT+      P    L  +GR  YS P+  W       A   T+FT  I   PN +  ADG+ FV     S P +                A    VE DT  N +W DP   H+GID+     N  KS+ ++  D   G   +V I YD  TK+L   + Y        ++   ++S+T+  +S+L
Sbjct:   43 ATVSSKGQLRLTNVNDNGEPT---LSSLGRAFYSAPIQIWDNTTGAVAASPTSFTFNID-VPNNSGPADGLAFVLLPVGSQPKDKGGLLGLFNNYKYDSNAHTVAVEFDTLYNVHW-DPKPRHIGIDV-----NSIKSIKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPS------LKTSFIVSDTVDLKSVL 222          
The following BLAST results are available for this feature:
BLAST of CX295526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHAE_PHAVU7.567e-1129.59Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
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Properties
Property NameValue
Genbank descriptionC05073B05SK DroRLeaf1 Citrus clementina cDNA clone C05073B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295526 ID=CX295526; Name=CX295526; organism=Citrus clementina; type=EST; length=767bp
GATTCGGCAGAGGCCTCGCGCCGAATCGGCACGAGGCTCAAATTTTCGTC
CCAAACAAAATGATTTTCCTACTACTCCTTTCAATTTTTCTTCCCAGTGC
TTCTTCATCAATCCCTGTGGATCCACCTGTTAGCTTCTCATTTTCCTCAT
TCAACCCAAAAAGTTGTAGCGATGGCAGCCTAATTTGCATGGGCGCAGTG
ACTCCAAGTTATGGCTACTTGAGCCTCACATCAGACCCTTCACCAGAATC
GCCAGATCAGCTGCCGCTAAAAAAGGTTGGACGGGTTTTATACAGCCAGC
CTGTGACTGCATGGCCAGCTATGATTAGTACCACCTTCACCATTAGGATC
TCACCCTACCCAAATACAACGGATTCTGCAGATGGCATGACGTTTGTTTT
TGCAACCGATACCAGCCCTCCAACTGAAAACTCCGCCGGCGGAAATCTTG
GACTGAGTAACGGTGTTTCGCAATTAGCCGTGGAGCTGGACACTTACAAG
AACGACTACTGGTCTGATCCAGATGCTAACCATATGGGCATTGACATAGC
AAACTTAACATCGAATCCAGCCAAGAGTCTCGACAGCTCTGGTATTGATC
TCAAAAGTGGAAGACCGATCCAGGTTCACATTTATTACGATGGATGGACG
AAAATACTCTATGTTTATGTGGCATATGCGGGGAACCCACTTCAGAAGCT
TATTGAAAGACCTATCCTCTTGTCAGAAACAATTCCAGCTCAGTCTATGT
TGGCTTCACAGCATCCA
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