CX295534

Overview
NameCX295534
Unique NameCX295534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8507 contig Ccv1_Contig8507:221..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295534 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  127 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFKEFLI-SQPSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNIYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 576
            MLA+F + +  PP EL  P +    ++ K  EEI + F    Q S  + +  GN  A ++    N N +  R    + +++C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR PYP  QV+++L+G F F+L+D KA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148          
The following BLAST results are available for this feature:
BLAST of CX295534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC8.424e-2539.07Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionC05073C02SK DroRLeaf1 Citrus clementina cDNA clone C05073C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295534 ID=CX295534; Name=CX295534; organism=Citrus clementina; type=EST; length=731bp
CGGCCGAGGCTCTTCTGTTATTAAAACATAATCATTATCTTTGGTGAATT
GTTGGTTTATTATTTACGAGTTATATCTCTTTCTGAAGATCTGTATTTTT
TTTCGTCTGAAAGAAGAAAAGAGAAGATGTTGGCAATATTCAACAAAGGG
TTAGTGAATCCACCTCAAGAGCTACACAGCCCAGCTTCGTTGAGTTCATC
AAGAAAGCCGAAGCATCCTGAGGAGATTTTCAAGGAATTTTTAATTTCGC
AGCCTTCTAATGCTTTTTCAATCAACTTCGGAAATGCAGCTGCTCTCGCT
TATGTGCCACCAGAAAATCCCAACTCCGTCTCCCAAAGGTGGTTTTGTGG
CTTACATAACATATACTGCATGTTCATGGGGAGCTTAAACAACTTGAGCA
GCCTCAACAAACAATATGGGCTGTCAAAAGGCTCCAATGAGGCCATGTTT
GTTATTGAAGCATACCGGACCCTCCGTGATCGCGGCCCATACCCGGCTCA
TCAGGTCCTGCGAGATCTTGATGGCAGCTTTGGTTTTGTGCTCTATGATT
GCAAGGCTGGAACTATATTTGCAGCACTGGATGCTGATGAAGGAGTGCGA
CTCTTCTGGGGCATTGCAGCTGATGGGTCCGTGGTCATTTCTGACAATTT
GGAGCTTATAAAAGCAAGTTGTGCCAAATCATTTGCACCGTTTCCAGCCG
GGTGCATGTTTCACAGCGAGCAAGGGCTGAT
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