CX295551

Overview
NameCX295551
Unique NameCX295551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2074..2709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.177e-84
Identity = 138/192 (71.88%), Postives = 158/192 (82.29%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIID 576
            YPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDEELQ WW+E+R +GHGDKK EPWWPVLKT  DLI ++TTI WVTSGHHAAVNFGQY YGGYFPNRPTT R  + TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID
Sbjct:  664 YPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVID 855          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.017e-70
Identity = 117/192 (60.94%), Postives = 146/192 (76.04%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIID 576
            YP+A+DGL +W +IKQW +DYV+ YY     V  DEEL+AWW E+RT GH DKK EPWWPV  T ++L++I+T I+WVTSGHHAAVNFGQY Y GYFPNRPT  R NI  E+  D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID
Sbjct:  664 YPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTID 855          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.450e-64
Identity = 117/206 (56.80%), Postives = 141/206 (68.45%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDAGCRSQLR*NELG 615
            YPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID   + +   N  G
Sbjct:  708 YPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCG 913          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.894e-64
Identity = 116/206 (56.31%), Postives = 142/206 (68.93%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDAGCRSQLR*NELG 615
            YPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID   + +   N  G
Sbjct:  691 YPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCG 896          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.228e-63
Identity = 113/192 (58.85%), Postives = 140/192 (72.92%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIID 576
            YP+ANDGL +WDAIKQW   YV HYYP  + +  DEELQAWWTE+RT GH DK+ EPWWP L + ++L + + TI+WVTSGHHAAVNFGQY   GY PNRPT AR N+ TE   D+  + F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D
Sbjct:  695 YPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDM-RDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVD 885          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.524e-57
Identity = 103/205 (50.24%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDAGCRSQLR*NELG 615
            YP+ANDGL +WDAIKQW +DYV HYYP    +  DEELQ WWTE+RT GH DK+ EPWWP L   + L++++ TI+WVTS HHAAVNFGQY   GY PN P+ AR N+  E    E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++   +   R N  G
Sbjct:  696 YPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHG 899          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.376e-53
Identity = 97/194 (50.00%), Postives = 131/194 (67.53%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYL--GKEIEPAWREDPVINAAFEKFRGKLMELEGIID 576
            YP+A DGL +W AIK  V  YV H+Y D   + SD ELQAWW EI+  GH DKK EPWWP L T +DL +I+T ++W+ SG HAA+NFGQY +GGY PNRPT  R  I  E  +D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+
Sbjct:  685 YPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTIN 876          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.319e-52
Identity = 99/206 (48.06%), Postives = 131/206 (63.59%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDAGCRSQLR*NELG 615
            YP+ANDGL LW AI+ WV  YV  YY + +L+++D ELQAW++E   VGH D +   WWP L T +DL+ +ITTI+W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID   R   R N  G
Sbjct:  695 YPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCG 898          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.408e-51
Identity = 90/188 (47.87%), Postives = 126/188 (67.02%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELE 564
            YP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWW  ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++   + P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAFE+F  KL ++E
Sbjct:  630 YPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFM--PEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIE 815          
BLAST of CX295551 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.839e-51
Identity = 90/188 (47.87%), Postives = 126/188 (67.02%), Query Frame = 1
Query:    1 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELE 564
            YP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E
Sbjct:  631 YPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFM--PEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIE 816          
The following BLAST results are available for this feature:
BLAST of CX295551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX2_ARATH8.177e-8471.88Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU3.017e-7060.94Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ1.450e-6456.80Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.894e-6456.31Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU1.228e-6358.85Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU6.524e-5750.24Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH4.376e-5350.00Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH6.319e-5248.06Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOXA_SOLLC1.408e-5147.87Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU1.839e-5147.87Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073D08SK DroRLeaf1 Citrus clementina cDNA clone C05073D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295551 ID=CX295551; Name=CX295551; organism=Citrus clementina; type=EST; length=636bp
TATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATG
GGTTACCGATTATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAAT
CTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACAC
GGTGACAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGA
TTTAATTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACG
CAGCTGTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGG
CCAACCACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAACA
ATGGAAATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTTCC
CTTCCCAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTATCG
ACTCATTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATG
GCGTGAGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGT
TAATGGAGCTTGAAGGGATTATTGATGCAGGATGCAGATCCCAGTTGAGA
TAGAATGAGCTGGGATGGGCATATGACTCTTGAGCA
back to top