CX295552

Overview
NameCX295552
Unique NameCX295552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length437
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13848 contig Ccv1_Contig13848:107..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.991e-45
Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 3
Query:   84 SSFHGSPIITS--RVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            SSFHG+P+  S  R+ PI+SS  +   +IS S +P YD N+F FDPIKESIVSREMTRRYMTDM+TYADTDV+VVGAGSAGLSCAYE+SKNP+I++AIIEQSVSPGGGAWLGGQLFSAMV
Sbjct:   23 SSFHGAPMSPSLLRLQPIKSSRPNNL-SISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV 141          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.698e-40
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 3
Query:   84 SSFHGSPIITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            SSFHGS I  +   PI    + ++ ++  + T  YD N+FTFDPIKESIVSREMTRRYMTDM+TYA+TDV+VVGAGSAGLS AYEISKNP+++VAIIEQSVSPGGGAWLGGQLFSAM+
Sbjct:   21 SSFHGSAISAA---PISIGLKPRSFSVRAT-TAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMI 134          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.183e-39
Identity = 82/120 (68.33%), Postives = 100/120 (83.33%), Query Frame = 3
Query:   84 SSFHGSPIITS--RVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            SSF+G+P+  S  RV P ++ ++    ++S + +P YD  +FTFDPIKESIVSREMTRRYM DM+TYADTDV+VVGAGS+GL C YE+SKNPS++VAIIEQSVSPGGGAWLGGQLFS MV
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSI-SMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMV 137          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 83/130 (63.85%), Postives = 99/130 (76.15%), Query Frame = 3
Query:   81 KSSFHGSPI-ITSRVTPIR---------SSSQSQTHTISMSLT-PQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            KSSF GS +   +R TP           + +     ++SMS + P YD  SF F PIKESIVSREMTRRYMTDM+TYADTDV++VGAGSAGLSCAYE+SK+P++ +AI+EQSVSPGGGAWLGGQLFSAMV
Sbjct:   11 KSSFAGSRLPAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMV 140          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.889e-38
Identity = 85/128 (66.41%), Postives = 96/128 (75.00%), Query Frame = 3
Query:   81 KSSFHGS--PIITSRVTPI-------RSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            KSSF GS  P  T   TP        R+       +IS S  P YD  SF F PIKESIVSREMTRRYMTDM+T+ADTDV++VGAGSAGLSCAYE+SK+P++ VAI+EQSVSPGGGAWLGGQLFSAMV
Sbjct:   11 KSSFAGSRLPSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMV 137          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.864e-25
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  180 PQYDFN-SFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            P Y  + SF+F PI+ES VSR MTRRY +D+  YA++D+++VGAGSAGL+ AY I ++ P +++AIIE SV+PGGGAWLGGQLFSAMV
Sbjct:   41 PTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMV 128          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.000e-24
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 3
Query:  114 SRVTPIRSSSQSQTHTISMSLT-------PQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            S  +   S+S SQ H  S  +T        + D++ F F PI+ES VSR MT RY  D+  +A +DVI+VGAGS+GLS AY I+KN P ++V IIE SV+PGGG+WLGGQLFSAMV
Sbjct:    2 SATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV 117          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.306e-24
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  105 IITSRVTPIRSSSQSQTHTISMSLTPQYD--FNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            ++ S   P+  +SQ++       L   +   ++ F F PI+ES VSR MTRRY  D+  YA++DV++VGAGS GLS AY ++K  P +++AI+E SVSPGGGAWLGGQLFSAMV
Sbjct:   21 VVVSETAPVEGASQTK-------LLDHFGGKWDEFKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMV 127          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.801e-24
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  105 IITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            + TS   P+ S + + T T+   L     ++ F F PI+ES VSR MTRRY  D+  YA++D++++GAGS GLS AY +  K P +++AIIE SVSPGGGAWLGGQLFSAM+
Sbjct:   16 LATSTKLPVMSKNIN-TKTVEEMLG---QWDDFKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMI 123          
BLAST of CX295552 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.468e-24
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  126 PIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 437
            P+  S  S   T    +  ++D   F F PI+ES VSR MTRRY  D+  YA++D+++VGAGS GLS  Y +  K P +++AIIE SVSPGGGAWLGGQLFSAMV
Sbjct:   25 PVGLSKNSAAATTVEEMEGKWD--DFKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMV 127          
The following BLAST results are available for this feature:
BLAST of CX295552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
THI4_CITSI2.991e-4575.83Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ARATH1.698e-4071.19Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ALNGL4.183e-3968.33Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI41_MAIZE6.040e-3863.85Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE7.889e-3866.41Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO5.864e-2562.50Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_YEAST1.000e-2453.45Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_ASPOR1.306e-2450.88Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSOX3.801e-2451.79Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSSH8.468e-2454.29Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]

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Properties
Property NameValue
Genbank descriptionC05073D09SK DroRLeaf1 Citrus clementina cDNA clone C05073D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295552 ID=CX295552; Name=CX295552; organism=Citrus clementina; type=EST; length=437bp
AAATTAACATAATGGCAGCCATGTCTACCACCCTCACTTCCTCACTCTCT
TCAGGCCCTAAATCTTCTTTCTTAGACCACAAGTCATCTTTCCATGGCAG
CCCAATCATCACTTCTCGTGTCACTCCCATCAGATCCTCCTCACAATCAC
AAACCCACACCATTTCCATGTCCTTGACTCCACAGTACGACTTCAACTCA
TTCACATTCGACCCCATCAAAGAATCAATCGTTTCTCGTGAAATGACCCG
CCGTTACATGACTGACATGGTCACCTACGCCGACACTGACGTCATCGTCG
TCGGTGCTGGCTCCGCCGGTCTCTCCTGCGCTTACGAGATCAGCAAGAAC
CCCTCAATCCGTGTCGCCATAATCGAGCAATCAGTAAGCCCTGGTGGTGG
CGCATGGCTCGGTGGCCAGCTCTTTTCGGCGATGGTC
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