CX295554

Overview
NameCX295554
Unique NameCX295554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:21..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295554 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:  262 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCS 660
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G S
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSS 239
[Close]
BLAST of CX295554 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:  262 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCS 660
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G S
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSS 232
The following BLAST results are available for this feature:
BLAST of CX295554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.766e-1332.59Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN3.612e-1331.85Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05073D11SK DroRLeaf1 Citrus clementina cDNA clone C05073D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295554 ID=CX295554; Name=CX295554; organism=Citrus clementina; type=EST; length=662bp
TCCTTTGATCCTTTCTCCTTGAGCTCCCAAAAAATTGCCATTACTATTTC
TTCCCAATGCACTAACTTGGGCTCCTTTTGCATACTCTTTAAACTAGTCC
CATTTGCAGATAATTTTTTTTTTTGGCCTCATTTCAGAATGGTTGCTGCA
AGAATGGGCCAATGGTTGAATCTTTTAGTATGTGCACTCATATTACTGAA
AGCTGACGGCTTTAATGTAGGAATCACTTATGTTGAGAATGCTGTAGCGA
AAGGAGCTGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTTGATAAG
GGGTTTGGTGCTGGGATCAATAATTGGTTGGTTCACATTGAGGGAGGAGG
ATGGTGCAACAATGTCACAACTTGTCTTGAACGTAAGAAAACCCGTTTAG
GTTCATCTAAGCAAATGGTCAAGGTAGTTGCTTTCTCTGGGATGCTGAGC
AACAAGCAAAAATTTAACCCAGACTTCTACAATTGGAATAGAATCAAGGT
TAGATACTGTGATGGTGCATCGTTTACTGGAGATGTGGAGGCTGTCAATC
CAGCAAATAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCATG
GAGGATCTAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTTC
TGGCTGCTCAGC
back to top