CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11750 contig Ccv1_Contig11750:38..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRR 496
            D+Y++LGV++ AT  +IK+AYR LA++YHPD+S D  A E FK I  AY +LS+E  R +YDR LK  +  ++S R    Y  +F +    S W  +RR
Sbjct:    5 DYYQILGVSKDATAEEIKKAYRRLAKEYHPDISADENASEKFKEINEAYHILSDEERRKEYDRILK--SGDEKSYRDFMEYIQDFLE----SIWQGMRR 97          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSFYRKAPVR 577
            D+Y++LGV++ ++  +IKRAYR LARKYHPDV+K+  A + FK I  AYEVLS++  R +YDR        +    G    +S F+D   I  +A+L     +E ++ N+       S  R+ PVR
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRARYDRF------GEAGLSGAAAAASGFQDFAGIGGFADL-----FESFFTNFAGGGVGYSRSRQGPVR 118          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++SA+  +IK+AYR LA+KYHPDVSK+  AVE FK ++ AYEVLS+E  R +YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRRLAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJB (Chaperone protein dnaJ OS=Synechococcus sp. GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSFYRKAPVR 577
            D+Y++LGV++ ++  +IKRAYR LARKYHPDV+K+  A E FK I  AYEVLS+   + +YDR        +    G    +S F+D   +  +A++     +E ++ N+       +  R+ PVR
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKARYDRF------GEAGLSGAAAAASGFQDFAGMGGFADI-----FESFFTNFAGAGASYARSRQGPVR 118          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACWK (Chaperone protein dnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 35/63 (55.56%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG++Q A+  +IK+AYR LA+KYHPDVSK+  A+E FK ++ AYEVLS++  R +YD+
Sbjct:    5 DYYEVLGLSQGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV++ A   DIKRAYR LARKYHPDV+K+  A E FK I  AYE+LS   TR +YDR
Sbjct:    4 DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAVT (Chaperone protein dnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGVA+ A   +IK+AYR LARKYHPDV+K+  A E FK I  AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_ANASP (Chaperone protein dnaJ OS=Anabaena sp. (strain PCC 7120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGVA+ A   +IK+AYR LARKYHPDV+K+  A E FK I  AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP7 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV++ A   +IKRAYR LARKYHPDV+K+  A E FK I  AYE+LS   TR +YDR
Sbjct:    4 DYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y +LGV++ A   D+K+AYR LARKYHPDV+K++ A E FK I  AYEVLS+  TR +YDR
Sbjct:    4 DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRARYDR 66          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
DNAJ_HYDTH2.611e-1544.44Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_SYNJA7.596e-1538.89Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_BACCN9.921e-1560.32Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_SYNJB4.924e-1436.51Chaperone protein dnaJ OS=Synechococcus sp. GN=dna... [more]
DNAJ_BACWK6.431e-1455.56Chaperone protein dnaJ OS=Bacillus weihenstephanen... [more]
DNAJ_MICAN8.399e-1460.32Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_ANAVT1.097e-1360.32Chaperone protein dnaJ OS=Anabaena variabilis (str... [more]
DNAJ_ANASP1.097e-1360.32Chaperone protein dnaJ OS=Anabaena sp. (strain PCC... [more]
DNAJ_CYAP71.433e-1358.73Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_CYAP41.433e-1358.73Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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