CX295557

Overview
NameCX295557
Unique NameCX295557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:85..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295557 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.312e-66
Identity = 134/238 (56.30%), Postives = 171/238 (71.85%), Query Frame = 2
Query:   17 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLVDALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHD---GPQSYVTGIPVPPINPSRG-SDLFPGPGAGMYPRRGGFGGDGSMLIGPDHPGFF 715
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLLVDA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPPI  + G SDLFPGPGAGMYP RGGF GDGSML+GP  P FF
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFF 235          
The following BLAST results are available for this feature:
BLAST of CX295557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH4.312e-6656.30Probable proteasome inhibitor OS=Arabidopsis thali... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05073E02SK DroRLeaf1 Citrus clementina cDNA clone C05073E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295557 ID=CX295557; Name=CX295557; organism=Citrus clementina; type=EST; length=722bp
AAAAATTAAAAAAAAAATGCCGAACGAGAAATCAGTGATGGCCGTGATAA
GAGCGGCAAGACCTACCTTTCGAAACGACTTCGATAAAATTGCATTTGTC
GTTCACGCCTCTTTCCTTGCCAGTGGACACGTGTTAACCGCCACTGGACC
TGCCGCGGACACCGAGTTCACCTCTCCCTCCTCCTCCACCGATGAAGTAG
GAATTGATCACTGGAACGAACTAGCTGATGATAATTACGCGTTTCTGTTT
ATAAACCCTGAGAAAGGTTCAAAGAAAGTGTTGGTGAAGTGTCTCGTGAT
GAACAGTAAATTGCTGGTTGATGCATTAGCTGAGGGAGCTTCGGAGCCTG
TGCATCTCGAAATCAATGTTGCAGACTACGTTGCAGAAAATGGAGGCAAT
TACTCTGATAAGTTCAAGAATTTAGAGAAGCTTGTGACAGATCTTGATAA
AGACATTATTTCAAAATTATACGGCTCCCCAAAAACAGCTAGCTCAGAAA
GATGTGAAGGATCAAGGCCTATTGTAACCGATCCTGCTTTTGGATTTGAG
CATGACGGGCCTCAATCTTATGTTACAGGAATTCCTGTTCCTCCTATCAA
CCCAAGTCGTGGTAGCGATCTTTTTCCTGGCCCTGGTGCTGGAATGTATC
CTAGAAGGGGTGGCTTTGGCGGTGATGGGAGCATGCTAATAGGACCTGAT
CATCCTGGCTTTTTTGGTGGAA
back to top