CX295559

Overview
NameCX295559
Unique NameCX295559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 2.942e-91
Identity = 154/209 (73.68%), Postives = 177/209 (84.69%), Query Frame = 3
Query:   90 MESKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            M S   FS+ LI L   Q LSVL AA++FDFFYFV QWPGSYCDT +SCCYPTTGKPAADFGIHGLWPN NDG+YPSNCDPN+P+DQSQISDL SSMQ+NWPTLACPSG+G TFWSHEWEKHGTC+ESVL NQH YF+ AL+LKNQI LL  L+ A I PDG SY L +I++AIK A G++PWI+CNVD+SGNSQLYQ+Y+CVD S S+
Sbjct:    1 MASNSAFSLFLILLIITQCLSVLNAAKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSS 209          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.374e-85
Identity = 142/202 (70.30%), Postives = 164/202 (81.19%), Query Frame = 3
Query:  111 SIILIKLFFI--QYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSAS 710
            S+ LI L  I     S   ++ +FDFFYFV QWPGSYCDT K CCYP +GKPAADFGIHGLWPNY DG+YPSNCD + PFD S ISDL +SM+K+WPTLACPSG+G  FW HEWEKHGTCSESV++QH+YFQTALNLK + +LL AL  AGI PDG SYSLESI+D+IKE+ GF+PW+ECN D SGNSQLYQ+YLCVD S S
Sbjct:    7 SLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRSGS 208          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 7.281e-74
Identity = 129/210 (61.43%), Postives = 161/210 (76.67%), Query Frame = 3
Query:   87 IMESKRQFSIILIKLFFIQYLSVLCA-ARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSAS 710
            +M+S+++   +LIK+  +Q L VLC  +++FDFFYFV QWP SYCDT +SCCYPTTGKP  DF IHGLWPNY DG +P NCD  +  D+S+ SDL S+M+KNWP+LACPS +G+ FWSHEW KHGTC  S LNQH YFQTAL+ K + +LLQ L  AGI P +G  Y +ESIK AI++  G +P+IECNVD  GN QLYQ+YLCVD+SAS
Sbjct:    1 MMKSQKK---LLIKIIVVQCLLVLCVTSQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTC--SALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLYQVYLCVDSSAS 205          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.509e-74
Identity = 121/196 (61.73%), Postives = 150/196 (76.53%), Query Frame = 3
Query:  123 IKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSAS 710
            I +  +Q L V   A++FDFFYFVLQWPG+YCD+  SCCYP TGKPAADFGIHGLWPNY  G +P NC+P++ FD  ++SDL S +Q+ WPTL+CPS +G+ FW+HEWEKHGTC+ES L+QH YF+  L LK + +LL AL  AGI PD   Y ++ I++ IK+  GF+P IECN D S NSQLYQIYLCVDTSAS
Sbjct:    5 IFILALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSAS 200          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 73/173 (42.20%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  168 RNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAAD----FGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPS-----GNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQIHLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVD 653
            R FD+F   LQWPG+YC   + CC        +D    F IHGLWP+YNDGS+PS C   + F + +IS L   ++K WP+L+C S     G   +FW HEWEKHGTCS  V  +++ YF T LNL  + ++   L  AG V   S  Y L  I  AI+ A   +P + C  D
Sbjct:   30 REFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPS-CCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRD 201          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 70/174 (40.23%), Postives = 97/174 (55.75%), Query Frame = 3
Query:  174 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLC 692
            FD F+FV QWP + C   KS   P +G     F IHGLWP    G+  +NC   +PFD ++IS L+S +   WP +     N   FWSHEW KHGTCSES  NQ  YF+ A++++N   ++ ALR     P+G + S ++IK  +K   G  P + C  D ++  S L Q+  C
Sbjct:    1 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-GSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVAC 169          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 67/182 (36.81%), Postives = 101/182 (55.49%), Query Frame = 3
Query:  171 NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSES--VLNQHQYFQTALNLKNQIHLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSA 707
            +FDF+ FV QW  SYCD+ ++C      K    F IHGLWP  +DGSYPS C     F+ + I DL   +  +WP+L  P+ +   FW+HE+ KHGTCS +  + + H YF T + L  + ++  AL +  I P D ++Y    I +AI    G  P I+C+     + QL  + +C+D ++
Sbjct:   31 DFDFYLFVQQWIYSYCDS-QTCIQ---NKEREAFTIHGLWPENSDGSYPSFCS-GPSFNVNAIQDLEDQLNFDWPSLTGPNTD---FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCS-----SGQLSTVAVCIDKNS 199          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 62/183 (33.88%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  168 RNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSY-PSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV---LNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSS-YSLESIKDAIKEASGFSPWIECNVDESGNSQ--LYQIYLCV 695
            +++++F F  QWP + C   KSC  P +      +GIHGLWP+ +  S  P NC+ + PFD + +  L   ++K WP L  P     +FW HEW KHGTC+ S+    N+ +YF   L L  + ++ + L   GI+P  ++ Y +   + A+K   G    IEC  D+    +  LY+I +C+
Sbjct:    1 KDWNYFTFAQQWPIAVCAEHKSCFIPDS---VVGWGIHGLWPSSDTESKGPENCNGSWPFDINNVMPLVPELKKYWPNLY-PDTKANSFWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECVYDKEKTKKQLLYEISICL 179          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNPB_PHYPO (Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 67/175 (38.29%), Postives = 87/175 (49.71%), Query Frame = 3
Query:  171 NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCV 695
            +FDFF FV +W  S                   F IHGLWP  +DGSYPS C  +  F  S ISDL  +MQ  WP+    +G+  +FWSHEW KHGTCS     +H +F T L+L +Q  +  AL   GI P  SS S +S+   I +  G  P + C       S    + LC+
Sbjct:    4 SFDFFIFVTEWNASISTEY--------------FTIHGLWPENSDGSYPSGCS-SGKFSTSTISDLIDTMQV-WPSF---TGDNASFWSHEWSKHGTCSGYA--EHDFFATVLSLYDQYDVKSALDNGGIEPGSSSVSSDSLISVITDNIGGVPVLNCE-----GSTFASVGLCI 152          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RN28_PANGI (Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 65/200 (32.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  111 SIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSAS 710
            S+I++ L    +     +   +  F   LQWP  +C+   +C    T      F IHGL+P    G+    CD  A FD + +SD  + M   WP+    + + I FW HEW+KHG CSE++L Q  YF+TAL  +    ++  L   GI P+   Y  + IK+AIK+     P I+   +E+    L  I +CV+  A+
Sbjct:    8 SVIIVSLSIFSWGGNARSDYPWAMFALRLQWPAGFCEVNNAC---DTKSLLNTFTIHGLYPYNAKGTPALYCDGTA-FDVNSVSDFLAEMHLAWPSHETNTED-IQFWEHEWKKHGRCSEALLKQTDYFRTALAFRKAFDIVGLLNQEGIYPNNDLYRPKMIKEAIKKHLNAVPEIDFTKNENSEYVLTDINVCVNQQAT 202          
The following BLAST results are available for this feature:
BLAST of CX295559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RNLE_SOLLC2.942e-9173.68Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNS1_ARATH5.374e-8570.30Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNLX_SOLLC7.281e-7461.43Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNS3_ARATH9.509e-7461.73Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=... [more]
RNS2_ARATH7.622e-3142.20Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNMC_MOMCH6.453e-3040.23Ribonuclease MC OS=Momordica charantia PE=1 SV=1[more]
RNDI_DICDI5.653e-2636.81Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
RNOY_CRAGI9.025e-2433.88Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
RNPB_PHYPO1.179e-2338.29Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV... [more]
RN28_PANGI1.179e-2332.50Ribonuclease-like storage protein OS=Panax ginseng... [more]

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Properties
Property NameValue
Genbank descriptionC05073E04SK DroRLeaf1 Citrus clementina cDNA clone C05073E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295559 ID=CX295559; Name=CX295559; organism=Citrus clementina; type=EST; length=721bp
GGCTTCTTCTATCATAGATACATTCAAAACCATTGTCGATCTCCCTCCCA
AAAATTAATATTGATTTTACTATTGGCACTTTGAGAATTATGGAGTCCAA
GCGCCAGTTTTCAATAATCTTGATCAAACTTTTCTTCATTCAGTATCTAT
CAGTTCTTTGTGCTGCCCGGAACTTCGATTTCTTCTACTTTGTCCTGCAG
TGGCCAGGATCATACTGTGATACAGCGAAGAGTTGCTGCTATCCAACGAC
TGGAAAGCCAGCAGCAGATTTCGGGATTCATGGACTCTGGCCTAATTACA
ACGATGGCTCCTATCCATCCAACTGTGACCCCAATGCCCCTTTCGATCAA
TCCCAGATATCAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACT
GGCTTGCCCAAGCGGGAACGGCATAACATTTTGGTCCCATGAATGGGAGA
AACACGGCACTTGCTCTGAGTCTGTGCTTAACCAACACCAGTACTTTCAA
ACAGCTCTTAACCTGAAAAATCAAATCCATCTCCTCCAAGCTCTCAGAAC
CGCAGGAATAGTGCCTGACGGGAGTTCGTACAGCTTGGAAAGCATCAAGG
ATGCGATAAAAGAAGCAAGTGGGTTCAGTCCATGGATAGAATGCAATGTT
GATGAATCAGGCAACAGCCAGCTTTATCAGATTTACTTGTGTGTCGACAC
TTCTGCCTCTAATTCATCAAC
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