CX295565

Overview
NameCX295565
Unique NameCX295565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.068e-71
Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 2
Query:   65 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517
            M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF+TNVQPTIRGRNVYVQFSSHQELTT+EQN  GR DEPNRILLVTIHHMLYPITV+VLHQVFSP+GFVEK+VTFQKSAGFQALIQYQ++  A
Sbjct:    1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCA 151          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+VIHVR +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R                                G  P  +L + + ++ YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 227          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R                                G  P  +L + + ++ YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R                                G  P  +L + + ++ YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+VIHVR +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R                                G  P  +L + + ++ YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 227          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R                                G  P  +L + + ++ YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT V P +R + VY+Q+S+H+EL T     Q R                              G  P  +L + I ++ YP+T+EVLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 197          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT V P +R + VY+Q+S+H+EL T     Q R                              G  P  +L + I ++ YP+T+EVLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 197          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 61/172 (35.47%), Postives = 97/172 (56.40%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT + P +R + VY+Q+S+H+EL T     Q R                              G  P  +L + I ++ YP+T+EVLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 226          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  E++E +++ L  PFG +T ++ML+ KNQA L++    +AI  + +Y+ V P +R + +Y+Q+S+H+EL                             TT+ ++A      P  +L + I +M YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225          
The following BLAST results are available for this feature:
BLAST of CX295565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PTBP3_ARATH2.068e-7188.08Polypyrimidine tract-binding protein homolog 3 OS=... [more]
PTBP1_RAT9.097e-2736.21Polypyrimidine tract-binding protein 1 OS=Rattus n... [more]
PTBP1_PIG1.188e-2635.63Polypyrimidine tract-binding protein 1 OS=Sus scro... [more]
PTBP1_BOVIN1.552e-2635.63Polypyrimidine tract-binding protein 1 OS=Bos taur... [more]
PTBP1_MOUSE2.027e-2636.21Polypyrimidine tract-binding protein 1 OS=Mus musc... [more]
PTBP1_HUMAN2.027e-2635.63Polypyrimidine tract-binding protein 1 OS=Homo sap... [more]
ROD1_RAT2.241e-2536.05Regulator of differentiation 1 OS=Rattus norvegicu... [more]
ROD1_MOUSE2.241e-2536.05Regulator of differentiation 1 OS=Mus musculus GN=... [more]
ROD1_HUMAN2.926e-2535.47Regulator of differentiation 1 OS=Homo sapiens GN=... [more]
PTBP2_RAT2.926e-2535.09Polypyrimidine tract-binding protein 2 OS=Rattus n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073E10SK DroRLeaf1 Citrus clementina cDNA clone C05073E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295565 ID=CX295565; Name=CX295565; organism=Citrus clementina; type=EST; length=636bp
TCATTCACTTCTAATTTTTCTCCCTCTCTCTCCTCTCTTCCTCTCTGTCT
CAGTGTGATTTAAGATGACAGAGCCGTCCAAGGTTATTCACGTTCGCAAT
GTGGGACACGAGATTTCTGAAAATGATTTACTTCAGCTATTCCAACCATT
TGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTTC
TCCAAATGCAAGATGTTCCTTCAGCCATCAATGCTCTGCAATTTTACACG
AATGTGCAGCCAACCATCAGGGGAAGGAATGTTTATGTCCAATTTTCATC
ACATCAGGAACTAACAACAATGGAACAGAATGCTCAAGGACGAGGTGATG
AGCCGAACCGAATTCTCTTAGTTACAATTCATCACATGCTTTATCCTATT
ACTGTGGAAGTGCTGCATCAAGTTTTTTCTCCTCATGGATTTGTGGAAAA
GATCGTCACATTCCAGAAGTCAGCTGGATTTCAAGCACTTATCCAGTATC
AATTACGTCCGAGTGCTGTTGTACTAGAATTCTCTTCAGGCGTAATATTT
ATGATGGTGCTGTCACTGGACATTCATTCTCAACCTTGATGAGTACAGTG
ACTACATATGAGCGATCAGGGACTCCAATCAATCTT
back to top