CX295567

Overview
NameCX295567
Unique NameCX295567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10109 contig Ccv1_Contig10109:13..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295567 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  233 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLNATK 505
            LI GIDFT SN W G  SF  +SLH I  G + NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF   D  C GFE VL+  K
Sbjct:  123 LIVGIDFTKSNEWTGARSFNRKSLHFI--GSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYK 212          
BLAST of CX295567 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  233 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVL 493
            LI GIDFT SN W G  SF  +SLH +   +T NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF      C GFE VL
Sbjct:  157 LIVGIDFTKSNEWTGAKSFNRKSLHHL--SNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVL 242          
BLAST of CX295567 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  233 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN---DSPCQGFEHVL 493
            LIFGID+T SN + G+ +F+   LHTI D   +NPYQ+VI I GK L  FD D  I  YGFGD+   D G+F+  E    +  C GFE VL
Sbjct: 7319 LIFGIDYTKSNFYQGERTFDKRPLHTI-DPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVL 7408          
The following BLAST results are available for this feature:
BLAST of CX295567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.647e-1853.26E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.452e-1652.27E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.097e-1549.45Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC05073E12SK DroRLeaf1 Citrus clementina cDNA clone C05073E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295567 ID=CX295567; Name=CX295567; organism=Citrus clementina; type=EST; length=557bp
GAGGGTCTACTCCTGCCTGGGGAAAAGTTAAAGGGTTCTTGCAGATCTAG
CTGTCGCCGGTGCACAAATCCTCACAGTAATTATGGTTATTCCCAGCAAC
AATTGGCCATTTGCAGCTGCCGGAACAAGTCGTCGACAATCAAGTGTCGA
TTTTGCAGAACCACCAAGATTCGATGATGAGTTGCCGGAGGCACCAGCAG
GCGTGAGAGATCCTAGTAAAGTCCGATACAAACTGATTTTTGGGATTGAT
TTCACTGCAAGCAATCTATGGGCTGGAAAATTCTCATTCGAAAACGAAAG
CCTTCACACCATTGTTGATGGTGACACCCTTAATCCATACCAGGAAGTTA
TCTATATCACTGGAAAGGAGCTGGTTCTCTTTGACGGTGACTGTATTCGT
TGTTATGGTTTTGGTGATGATACCACACGGGATGAGGGAGTGTTTAGTTT
TCAAGAGAATGATTCCCCATGTCAGGGGTTTGAACACGTCTTGAATGCTA
CAAAGATGTTCCATGGCATATTTGGCAGATTTCTCGTACTCATCTGAACA
ATTCTTT
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