CX295574

Overview
NameCX295574
Unique NameCX295574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 320
            NRV+I+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL       STETS IF+    DV
Sbjct:  927 NRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDV 1029          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIF 299
            +RVI+FDPDWNPSTD QARERAWR+GQK+DV VYRL+T GTIEEK+YHRQI+K FLTNKILK+P+QRRFFK  ++ DLFTL D+   G TET ++F
Sbjct:  714 DRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTEG-TETGSMF 808          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSN 293
            NR+IIFDPDWNPSTD+QARERAWRIGQK++V++YRL+  G+IEEK+YHRQI+K FLTN+IL +P+Q+RFFK   + DLF+L  + NG STE  N
Sbjct:  743 NRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSLGGE-NGYSTEELN 835          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLNDDGNGGS 278
            +RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K  L   T    KNP   R+F  + +++LFT+ D  N  +
Sbjct:  551 SRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFSKQELRELFTIEDFQNSAT 640          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   15 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260
            RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K  L   T    KNP   R+F  + +K+LFT+ D
Sbjct:  553 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFTKQELKELFTVGD 635          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   15 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260
            RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K  L   T    KNP   R+F  + +++LFT+ D
Sbjct:  550 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFSKQELRELFTIED 632          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260
            NRV+IFDP WNP+TD QA +RA+RIGQ ++V +YRLIT GT+EEK+Y RQ++K  L   T    KNP   R+F  + +++LF L D
Sbjct:  564 NRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFSKQELRELFKLED 647          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.361e-18
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260
            NR+I+FDPDWNP+ D QA  R WR GQK+D  VYR I  GTIEEK++ RQ +K  L++ ++   Q   R F   N++ LF LND
Sbjct:  700 NRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQLND 783          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260
            NR+++FDPDWNP+ D QA  R WR GQK+   +YRL++ GTIEEK++ RQ +K  L++ ++   Q   R F    +K+LF+LN+
Sbjct:  575 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 658          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260
            NR+++FDPDWNP+ D QA  R WR GQK+   +YRL++ GTIEEK++ RQ +K  L++ ++   Q   R F    +K+LFTL++
Sbjct:  586 NRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669          
The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ERCC6_HUMAN1.363e-3667.96DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
RHP26_SCHPO3.357e-3571.88DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
RAD26_YEAST3.474e-3267.02DNA repair and recombination protein RAD26 OS=Sacc... [more]
ERC6L_BOVIN1.977e-1951.09DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
ERC6L_MOUSE3.373e-1955.29DNA excision repair protein ERCC-6-like OS=Mus mus... [more]
ERC6L_HUMAN4.405e-1954.12DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
ERC6L_DANRE7.514e-1953.49DNA excision repair protein ERCC-6-like OS=Danio r... [more]
RAD54_SCHPO6.361e-1851.19DNA repair protein rhp54 OS=Schizosaccharomyces po... [more]
RAD54_CHICK7.033e-1746.43DNA repair and recombination protein RAD54-like (F... [more]
RAD54_MOUSE2.046e-1646.43DNA repair and recombination protein RAD54-like OS... [more]

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Properties
Property NameValue
Genbank descriptionC05073F07SK DroRLeaf1 Citrus clementina cDNA clone C05073F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bp
CTGACTGGTGCAACAGGGTGATCATTTTTGACCCTGATTGGAACCCATCA
ACTGACGTGCAGGCTAGGGAGCGTGCTTGGCGTATCGGTCAAAAACAGGA
TGTAACTGTATATAGATTGATTACACGCGGAACTATTGAGGAGAAAGTGT
ACCACCGACAGATATACAAGCATTTTCTCACAAATAAGATATTGAAGAAC
CCACAGCAGAGAAGGTTTTTTAAAGCTCGTAATATGAAAGATCTTTTCAC
TCTCAATGATGATGGGAATGGTGGGTCTACTGAAACTTCTAATATTTTTA
GTCAGTTGTCTGAAGATGTGAATGTTGTTGGGGATCAGAAAGATAAGGAG
GACAAGCAGAAACATAAGAAAGCTGCTTCAGCAAACGCTGATGATGCTGT
AGGTGACAAAGAAAACAACTTAGAGATTGGGTCCTCCAGGAGAAAAGGGA
AAGAAAAAGTTGATAATATTGGTGACGAAGTAGATGAAGAAACAAATATT
TTAAAGAGCCTCTTTGACGCCAATGGAATACATGTAAGTTTTCCTCTGTT
TGCTTACATGATTGCCTTTGGTTGCGTAGGCTGTACACTCTTTTTCTGTG
GAGGAGTTAATCTTCTTGCCTCTAACTCATTGATCAAAAGACTTACCCTG
CTACTACTATAA
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