CX295576

Overview
NameCX295576
Unique NameCX295576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9441 contig Ccv1_Contig9441:13..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295576 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 72/154 (46.75%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  224 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKN 685
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KN
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKN 161          
BLAST of CX295576 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  338 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLV 676
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA +A  T T        N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAA-AAKATET-------INLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFV 216          
The following BLAST results are available for this feature:
BLAST of CX295576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF3B_ARATH1.519e-2846.75Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH1.526e-1244.25Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
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Properties
Property NameValue
Genbank descriptionC05073F09SK DroRLeaf1 Citrus clementina cDNA clone C05073F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295576 ID=CX295576; Name=CX295576; organism=Citrus clementina; type=EST; length=698bp
GTCACAACAACCACCACAAAAAGGCAAAATCAAAATTAAAACCAAAGCAA
AGGCGAGGAAGCTGCGAGAGAAAATTAAAAAAAATTGAAAAAAATCGAAG
AAGAAGAGGAAGGAGTCTGGAAATTTCTCGAGTTTAATTCAAATGGAGGA
ATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGGAATGGAAG
TAGACGATAAGAAGAAGCATGAGGTTGCGCAAAACGACGCCGGATCTGCT
GCAGGGCTTGATTTGTCGGGGAACGAGGTGTTTAACAACACCATCAGGGC
CACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACCTTGCTCCAACTC
AGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCCATTCCG
GCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGCCACTGT
TACTAACACAAGTGACATGAAGAAGGACGATACCAACTGTCCTGCCTCTT
CACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGTGCTTTG
GCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAATCTCCTCTGCAA
ATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCAGCGATTTT
TCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCATATCCTGGTCA
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