CX295581

Overview
NameCX295581
Unique NameCX295581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295581_ssr15 microsatellite CX295581_ssr15:15..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 8.471e-94
Identity = 166/223 (74.44%), Postives = 193/223 (86.55%), Query Frame = 3
Query:   51 MEQSGPTYDSGSGGG-APVGVRIQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            M+ +G +   G GGG   VGV+I+  R LPDFLQSVNLKYVKLGYHYLISNLLTLC  PL ++ S++ S+MN DDL+QLWIHLQ+NLVS++ICSAILVFGLTV++MTRPRPVYLVD+SCY PP +LKA Y +FMEHS+LTGDFD+S+LEFQR ILERSGLGE+TY PEAMH +PP+ SMAAAREEAEQVM+GALDNLF+NTNV PKDIGILVVNCSLF   PS
Sbjct:    1 MDGAGESRLGGDGGGDGSVGVQIRQTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPTPS 223          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.516e-78
Identity = 135/210 (64.29%), Postives = 170/210 (80.95%), Query Frame = 3
Query:   93 GAPVGVRIQHN--RRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            G  V +R ++N  R+LP+FLQSVN+KYVKLGYHYLI++L  LC +PL+ +   ++S +  DDL Q+W+HLQ+NLV+ +  SA+ +FG TV+IM+RPR VYLVDYSCY PP +L+  Y KFM+HSKL  DF+ESSLEFQR ILERSGLGEETY PEA+H IPP+P+M AAREE+EQVM+GALD LF NT +NP+DIG+LVVNCSLF   PS
Sbjct:   10 GGSVQIRTENNERRKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIPPRPTMMAAREESEQVMFGALDKLFENTKINPRDIGVLVVNCSLFNPTPS 219          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.967e-66
Identity = 119/198 (60.10%), Postives = 153/198 (77.27%), Query Frame = 3
Query:  123 NRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            +R LPDF +SV LKYVKLGYHYLI++ + L   PL+++ + Q+S  ++ DLR LW HLQ+NL+SVV+CS +LVF +T++ MTRPRPVYLV++SC+KP  + K +   FM+ SKLTG F E +LEFQR IL+RSGLGE TY PEA+  +PP P M  AR+EAE VM+GA+D L + TNVNPKDIGIL+VNCSLF   PS
Sbjct:   14 DRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLFNPTPS 211          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.196e-55
Identity = 108/208 (51.92%), Postives = 143/208 (68.75%), Query Frame = 3
Query:   93 GAPVGVRIQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            G PV +R Q+              YVKLGYHYLI++   L F+PL+ +  + VS ++++ L+     L +N    +    + + G  VF M+RPR +YL+DYSCY PP + K SY KFM +S L  DF E+SLEFQR IL RSGLGEETY P+++H+IPP+P+MAAAREEAEQV++GALDNLF NT +NP++IG+LVVNCSLF   PS
Sbjct:    5 GGPVQIRTQN--------------YVKLGYHYLITHFFKLMFLPLMAVLFMNVSLLSLNHLQ-----LYYNSTGFIFVITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPPRPTMAAAREEAEQVIFGALDNLFENTKINPREIGVLVVNCSLFNPTPS 193          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.616e-52
Identity = 103/195 (52.82%), Postives = 136/195 (69.74%), Query Frame = 3
Query:  132 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            LP+FL SV LKYVKLGYHYLISN L +  +PL+  T   +S   I+DL  L+  L+F+ +S  + +A+L+   T +  TRPR V+L+D+SCYKP  +L  + + FM+ S+  G F E +L FQ+ ILERSGLG++TYFPEA+  +PP P M  AR+EAE VM+GA+D +   T V PKDIGILVVNCSLF   PS
Sbjct:   28 LPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMEEARKEAETVMFGAIDAVLEKTGVKPKDIGILVVNCSLFNPTPS 222          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.142e-52
Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 3
Query:  132 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            +P+F  SV LKYVKLGY YL+++ L+   IP++ I ++++  M  +++  +W  LQF+LV V+  S  ++F  TV+ M++PR +YLVDYSCYKPP   +  +  FMEHS+L       S+EFQ  ILERSGLGEET  P A+H IPP P+M AAR EA+ V++ A+D+LF  T + PKD+ IL+VNCSLF   PS
Sbjct:    6 MPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRVPFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLFSPTPS 200          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.142e-52
Identity = 101/199 (50.75%), Postives = 144/199 (72.36%), Query Frame = 3
Query:  123 NRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHL-QFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            N++LP+FL SV LKYVKLGYHYLISN + +  +P+ ++ +   S  ++ DL  L+ HL +F+ +S  + +A+L+F  T++  TRPR ++L+D++CYKP  +L  + + FM+ S+  G F E +L FQ+ ILERSGLG++TYFPEA+  +PP P M+ AR+EAE VM+GA+D +   T VNPKDIGILVVNCSLF   PS
Sbjct:   19 NKKLPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATS-SSFSLTDLTLLYNHLLKFHFLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMSEARKEAETVMFGAIDAVLEKTGVNPKDIGILVVNCSLFNPTPS 216          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.334e-51
Identity = 99/195 (50.77%), Postives = 134/195 (68.72%), Query Frame = 3
Query:  132 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            + DF  SV LKYVKLGY YLI+N LTL  IP+I   +I++  M  +++  +   L F L+ ++  S +++F  TV+ M++PR VYLVDYSCYKPP   +  +  FMEHS+L    +  S+EFQ  ILERSGLGEET  P A+H IPP P+M +AR EA+ V++ A+++LF NT + PKDI IL+VNCSLF   PS
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATVAIELLRMGPEEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLFSPTPS 195          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.044e-47
Identity = 98/216 (45.37%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   78 SGSGGGAPV-GVRIQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIP-LIIITSIQVSEMNIDDL-RQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            SG   G+P   VR++  RRLPDFLQSVNLKYVKLGYHYLI++ + L  IP L+++ S +V  ++ +++ ++LW    ++L +V+    + V    V+ M+RPR VYL+D++CYKP    K + ++F+E ++ +G FDE +L F++ IL+ SG+G+ETY P ++ +     +M   REEA  V++GALD LF  T V PKD+G+LVVNCS+F   PS
Sbjct:   22 SGPNAGSPTFSVRVR--RRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSREEIWKKLW---DYDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSISSSENITTMKEGREEASTVIFGALDELFEKTRVKPKDVGVLVVNCSIFNPTPS 232          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 98/201 (48.76%), Postives = 129/201 (64.18%), Query Frame = 3
Query:  144 LQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFME----------HSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            + SVN   VKL Y Y+++N   LC  PL    + + S + I+DL     +LQ NL++V +  A  VFGL ++I+TRP PVYLVDYSCY PP +LK S  K M+           S+     D SSL+F R I ERSGLG+ETY PE +  +PP+ + AA+REE E+V+ GAL+NLF NT VNP++IGILVVN S+F   PS
Sbjct:    1 MTSVN---VKLLYRYVLTNFFNLCLFPLTAFLAGKASRLTINDLHNFLSYLQHNLITVTLLFAFTVFGLVLYIVTRPNPVYLVDYSCYLPPPHLKVSVSKVMDIFYQIRKADTSSRNVACDDPSSLDFLRKIQERSGLGDETYSPEGLIHVPPRKTFAASREETEKVIIGALENLFENTKVNPREIGILVVNSSMFNPTPS 198          
The following BLAST results are available for this feature:
BLAST of CX295581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KCS4_ARATH8.471e-9474.443-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH6.516e-7864.293-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH1.967e-6660.103-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS2_ARATH1.196e-5551.92Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS19_ARATH1.616e-5252.823-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS6_ARATH6.142e-5249.743-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH6.142e-5250.753-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS5_ARATH2.334e-5150.773-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH2.044e-4745.373-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS18_ARATH1.465e-4548.763-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC05073G02SK DroRLeaf1 Citrus clementina cDNA clone C05073G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295581 ID=CX295581; Name=CX295581; organism=Citrus clementina; type=EST; length=729bp
TGACCTTCCCCCCATCTCTCTCTCTCTCTCTCCGTCAATCACTACCGGCA
ATGGAACAAAGCGGCCCAACATACGACAGTGGTAGCGGCGGCGGTGCTCC
GGTTGGTGTTCGGATCCAACACAATAGAAGGTTACCCGATTTCTTACAAA
GCGTGAATCTTAAGTACGTAAAACTTGGGTACCATTACCTCATTTCAAAT
CTATTAACACTATGTTTCATTCCCTTAATTATAATCACCTCTATTCAAGT
TTCGGAAATGAACATTGATGATCTACGTCAGTTGTGGATTCACCTTCAGT
TCAATCTCGTAAGCGTTGTTATTTGCTCAGCCATTCTTGTTTTTGGCTTA
ACGGTTTTTATCATGACTCGGCCAAGACCGGTTTATTTAGTTGATTACTC
CTGTTATAAACCACCCCATAATCTCAAAGCCTCGTATGATAAATTCATGG
AGCATTCGAAGTTAACAGGGGATTTTGATGAGTCCTCTCTCGAGTTCCAG
CGCAATATTCTTGAGCGTTCTGGGCTTGGAGAGGAGACTTATTTCCCTGA
AGCTATGCATGCTATTCCACCTAAGCCATCAATGGCTGCTGCCAGAGAAG
AGGCTGAGCAGGTCATGTATGGTGCGTTGGATAACCTTTTTAGTAATACA
AATGTTAATCCCAAAGATATTGGTATTCTTGTTGTCAATTGTAGTTTGTT
TATCCTACACCCGTCTTGTCAGCTATGAT
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