CX295586

Overview
NameCX295586
Unique NameCX295586
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295586 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 44/141 (31.21%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-------------DHSGFPESELF----ALYKEMRDGYATADATVSLQKVASQLGYDDLDAVTTEDMTLEVLRR 372
            S A+ F    E  ++  ET+ LK+LSS  ++VV  G GAV    N   +  GIS+W+DVP   +A               D SG   S  F    A++ E  + Y  A+A VSL+ +A++ GY ++  +T  ++ +E   +
Sbjct:  145 SVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQ 285          
BLAST of CX295586 vs. ExPASy Swiss-Prot
Match: AROK_SYNP6 (Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 36/107 (33.64%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMD--------HSGFPESELFALYKEMRDGYATADATVSLQ 294
            S  + F    E G++Q ET+VL++++S  RLVV  G G V    N + L+ G+ +W+DVP P ++ R++         +  P + L AL+++ RD YA AD  ++++
Sbjct:   51 SIPEIFASDGEAGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGDQNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157          
BLAST of CX295586 vs. ExPASy Swiss-Prot
Match: AROK_SYNE7 (Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 36/107 (33.64%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMD--------HSGFPESELFALYKEMRDGYATADATVSLQ 294
            S  + F    E G++Q ET+VL++++S  RLVV  G G V    N + L+ G+ +W+DVP P ++ R++         +  P + L AL+++ RD YA AD  ++++
Sbjct:   51 SIPEIFASDGEAGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGDQNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157          
The following BLAST results are available for this feature:
BLAST of CX295586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AROK_ARATH2.001e-1131.21Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SYNP67.604e-1133.64Shikimate kinase OS=Synechococcus sp. (strain ATCC... [more]
AROK_SYNE77.604e-1133.64Shikimate kinase OS=Synechococcus elongatus (strai... [more]
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Properties
Property NameValue
Genbank descriptionC05073G07SK DroRLeaf1 Citrus clementina cDNA clone C05073G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295586 ID=CX295586; Name=CX295586; organism=Citrus clementina; type=EST; length=377bp
TCTGCTGCTAAAGCTTTCAGGGAGAGTGATGAGAAGGGCTATCAGCAGGC
TGAGACTGAAGTATTGAAGCAGTTATCATCCATGGGTCGACTAGTAGTTT
GTGCGGGAAATGGTGCAGTTCAGAGTTCAGCTAATCTGGCACTTTTAAGA
CATGGAATATCATTATGGATCGACGTTCCTCCAGGCATGGTAGCAAGAAT
GGACCACAGCGGATTTCCTGAATCAGAGCTATTTGCTTTATATAAAGAAA
TGAGAGATGGATATGCCACAGCTGATGCAACCGTTTCTCTCCAAAAGGTA
GCTAGTCAATTGGGTTATGATGACTTGGATGCTGTAACCACAGAAGACAT
GACTTTGGAGGTTCTAAGGAGATAGAG
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