CX295599

Overview
NameCX295599
Unique NameCX295599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 5.962e-119
Identity = 214/240 (89.17%), Postives = 226/240 (94.17%), Query Frame = 1
Query:   16 QAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSANFQSRDAK 735
            +AI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKE+NKQGKEV YDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QG KLKDFVA  QS+ FQS  +K
Sbjct:  252 KAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISK 491          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 7.288e-117
Identity = 210/240 (87.50%), Postives = 225/240 (93.75%), Query Frame = 1
Query:   16 QAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSANFQSRDAK 735
            +AIMLADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +G KLKDFV   +S+  QS  +K
Sbjct:  252 KAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISK 491          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 2.121e-116
Identity = 208/232 (89.66%), Postives = 223/232 (96.12%), Query Frame = 1
Query:   16 QAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSA 711
            +AI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKGVKE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQG KLKDFVAT +S+
Sbjct:  252 KAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESS 483          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.680e-113
Identity = 201/234 (85.90%), Postives = 221/234 (94.44%), Query Frame = 1
Query:   16 QAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSANF 717
            +A++LADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNK IDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++G KLKDFV   Q++++
Sbjct:  252 KAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSY 485          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 8.339e-113
Identity = 206/241 (85.48%), Postives = 223/241 (92.53%), Query Frame = 1
Query:   16 QAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSAN-FQSRDAK 735
            +A+MLADMAHISGLVAA VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV YD+E+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK K IDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QG KLKDFV+  +S++  QS  AK
Sbjct:  251 KAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAK 491          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.587e-79
Identity = 137/221 (61.99%), Postives = 184/221 (83.26%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKL 681
            A +++DMAHISGLVAA V+PSPFE++D+VTTTTHKSLRGPRGAMIFFRKG+K + K+GKE+ Y+ E+KIN +VFPG QGGPHNHTI  +AVALKQA +PE+K YQ++++ N   FAQ L +MGY+LVSGGT+NHL++++L   ++DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F++VA + D+AVKLA  +K+     KL
Sbjct:  231 AYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKL 451          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.708e-79
Identity = 139/215 (64.65%), Postives = 180/215 (83.72%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 663
            A +++DMAHISGLVAAGV  SPFEY+D+VTTTTHKSLRGPRGAMIF+RKGV+++ K+GKEV YD +++IN +VFPG QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L++ G+ELVSGGT+ HL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  ++FA+VA + D AVKLA+ IKS+
Sbjct:  239 AYLMSDMAHISGLVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGKEVLYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ 453          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 4.618e-79
Identity = 144/228 (63.16%), Postives = 176/228 (77.19%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATT 702
            A +++DMAHISGLVAAG+IPSPFEY+DVVTTTTHKSLRGPRGAMIF+RKGV+ +N +G E  YD EEKIN AVFPGLQGGPHNHTI G+AVALKQ  + ++  Y EQ+L N    A+ L + GY L +GGT+NHL+LV+L+   ++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF A T
Sbjct:  253 AYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFT 479          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 293.893 bits (751), Expect = 6.032e-79
Identity = 143/227 (63.00%), Postives = 178/227 (78.41%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGNKLKDF 690
            A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKSLRGPRGAMIFFR+GV+ +N K G+E+ YD E  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQEQVL N         + GY+LVS GT++H+VLV+LK+K+IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF K+  + D AV  A +++S+     NKLKDF
Sbjct:  215 AYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDF 441          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.029e-78
Identity = 142/239 (59.41%), Postives = 186/239 (77.82%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSANFQSRDAK 735
            A +L+DMAHISGLV+A V  SPF Y+D+VTTTTHKSLRGPRGAMIFFRKG++++  +GKE+ Y+ E KIN  VFPG QGGPHNHTI+ LAVALKQ T PEY  YQ++V+SN   FA  L+  G++LVS GT+ HL+LV+L+++ IDG+RVE VLE  +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF  E+F KVA F D AV +A+++K++ QG   K+ +A+ +    +S   K
Sbjct:  236 AYLLSDMAHISGLVSAVVTDSPFPYSDIVTTTTHKSLRGPRGAMIFFRKGIRKVTTKGKEIPYELERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVK 474          
The following BLAST results are available for this feature:
BLAST of CX295599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR5.962e-11989.17Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR7.288e-11787.50Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU2.121e-11689.66Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA1.680e-11385.90Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH8.339e-11385.48Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_YEAST1.587e-7961.99Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA2.708e-7964.65Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR4.618e-7963.16Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CANAL6.032e-7963.00Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_CANAL1.029e-7859.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05073H08SK DroRLeaf1 Citrus clementina cDNA clone C05073H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295599 ID=CX295599; Name=CX295599; organism=Citrus clementina; type=EST; length=736bp
AGGTTTGCACAAACACAAGCTATAATGTTGGCAGATATGGCACACATTAG
TGGTTTGGTTGCTGCTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATG
TTGTGACCACCACAACTCACAAATCACTTCGTGGGCCACGTGGAGCCATG
ATTTTCTTTAGGAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGT
GTTTTATGATTATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCC
AAGGTGGCCCACACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAA
CAGGCCACTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAA
TTGCTCGAAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTT
CTGGTGGAACTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGA
ATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGC
CAACAAAAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCA
TCAGGATGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGAT
TTTGCCAAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAA
GATCAAGTCTGAAACTCAAGGAAACAAGTTGAAAGATTTCGTGGCCACCA
CACAGTCCGCTAACTTCCAATCCCGAGATGCGAAAC
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