CX295608

Overview
NameCX295608
Unique NameCX295608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.086e-35
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  383 SSILQDIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            S+ +QD+ EEV KI   M TG+DVSFDC GFNKTMSTAL+ATRAGGKVCLVG+   EMTVPLTPAAAREVD  G
Sbjct:  236 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVG 309          

HSP 2 Score: 58.9214 bits (141), Expect = 2.086e-35
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            +VG+FRY+NTWPLCLEFLRSGKID+ PL
Sbjct:  307 IVGIFRYRNTWPLCLEFLRSGKIDVKPL 334          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 53.5286 bits (127), Expect = 2.683e-11
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  395 QDIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA REVD  G
Sbjct:  230 QEIARKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKG 296          

HSP 2 Score: 35.8094 bits (81), Expect = 2.683e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  +++ PL
Sbjct:  294 IKGVFRYCNTWPVAISMLASKSVNVKPL 321          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 53.9138 bits (128), Expect = 3.483e-11
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  398 DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD  G
Sbjct:  231 DIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKG 296          

HSP 2 Score: 35.039 bits (79), Expect = 3.483e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  +++ PL
Sbjct:  294 IKGVFRYCNTWPMAVSMLASKTLNVKPL 321          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 53.5286 bits (127), Expect = 3.483e-11
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  395 QDIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            Q+IA +VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD  G
Sbjct:  230 QEIASKVESL---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKG 296          

HSP 2 Score: 35.4242 bits (80), Expect = 3.483e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  +++ PL
Sbjct:  294 IKGVFRYCNTWPMAISMLASKTLNVKPL 321          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 3.483e-11
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  395 QDIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD  G
Sbjct:  230 QEIAGKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDIKG 296          

HSP 2 Score: 36.1946 bits (82), Expect = 3.483e-11
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  ++I PL
Sbjct:  294 IKGVFRYCNTWPVAISMLASKSVNIKPL 321          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 52.373 bits (124), Expect = 4.522e-11
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  395 QDIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            Q+IA++VE +   +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD  G
Sbjct:  229 QEIAKKVEGL---LGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKG 295          

HSP 2 Score: 36.1946 bits (82), Expect = 4.522e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  +++ PL
Sbjct:  293 IKGVFRYCNTWPMAISMLASKSVNVKPL 320          
BLAST of CX295608 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 7.619e-11
Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 2
Query:  407 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDXGG 604
            E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD  G
Sbjct:  228 EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKG 293          

HSP 2 Score: 36.1946 bits (82), Expect = 7.619e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  597 VVGVFRYKNTWPLCLEFLRSGKIDISPL 680
            + GVFRY NTWP+ +  L S  +++ PL
Sbjct:  291 IKGVFRYCNTWPMAISMLASKSVNVKPL 318          
The following BLAST results are available for this feature:
BLAST of CX295608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IDND_VITVI2.086e-3574.32L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_HUMAN2.683e-1141.43Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_RAT3.483e-1139.13Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MOUSE3.483e-1138.57Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_MACFA3.483e-1140.00Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_BOVIN4.522e-1138.57Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP7.619e-1136.36Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionC05074A05SK DroRLeaf1 Citrus clementina cDNA clone C05074A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295608 ID=CX295608; Name=CX295608; organism=Citrus clementina; type=EST; length=700bp
TATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTAAAGTTTCAACA
AATTTGCAGGTATGTTACTGCCCATTGCCCAGCAGAAGAGTTTAGAAAAG
TAAAAGACATCTCAAAATCTTCATGCTCACAATCCTTCCCTTTCTCTTAA
TCATCATAACAACATGTTCTGCTGAACCAACTCTGTTGCATTAAGACCTT
GTTTCAACTTCCTCAGTTCATTTTTGTTCTCAGTACCTTTTTGTTCTCTG
TTTGAAAGTTGACCACTCTAATCTGCATTATTCTTGTTATCAGAGTAGAG
GTGAGCTTGAGCTTTGGTTCGTTTGAAAATTGTTCATGTGCTCCTCACGC
TTGTTTTTTCTGTGTGAATAAACCGCTATGCGTCGAGTATTTTGCAGGAT
ATAGCTGAAGAAGTGGAAAAGATAGATAAAGCCATGGGGACAGGAATAGA
TGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTCAACAGCACTGA
GTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGATGGGTCATCAT
GAAATGACTGTCCCACTCACTCCAGCTGCTGCAAGGGAGGTGGATNGTGG
TGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCTGGAGTTCCTT
AGAAGCGGAAAGATTGATATAAGCCCCTTGTCCGCATAGGTTTGGTTTCT
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