CX295615

Overview
NameCX295615
Unique NameCX295615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12207 contig Ccv1_Contig12207:84..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.810e-85
Identity = 159/217 (73.27%), Postives = 183/217 (84.33%), Query Frame = 1
Query:   22 TTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            ++SAF+S N+ +    D +++ +S+S S+         S   H  RG S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:    9 SSSAFISANHFSSD--DDSSSPRSISPSL--------ASVFLHHTRGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 215          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.670e-85
Identity = 160/226 (70.80%), Postives = 187/226 (82.74%), Query Frame = 1
Query:    4 RWNLQQ---TTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            RW ++    ++SAF+S N+ +    D +++ +S+S S+         S   H  RG S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:   14 RWPVRSVAPSSSAFISANHFSSD--DDSSSPRSISPSL--------ASVFLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDF 229          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.921e-84
Identity = 153/192 (79.69%), Postives = 166/192 (86.46%), Query Frame = 1
Query:   97 SRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            S    SP P S  S      RG S+ ++S     GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:   34 SSPARSPSPASLASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 225          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.542e-83
Identity = 152/192 (79.17%), Postives = 166/192 (86.46%), Query Frame = 1
Query:   97 SRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            S    SP P S  S      RG S+ ++S     GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT+EDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:   34 SSPTRSPSPTSLASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 225          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.630e-83
Identity = 150/182 (82.42%), Postives = 166/182 (91.21%), Query Frame = 1
Query:  127 SFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            S TS+   +I G S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:   12 SVTSNSFSIISGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDF 193          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.908e-82
Identity = 152/192 (79.17%), Postives = 169/192 (88.02%), Query Frame = 1
Query:   97 SRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            S    SP P S TS     IRG S+ ++S    LGL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYAS +RLLILKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT++DI+LANSVD+ +LRDPQ+D+ RVKNPEWLVVVGVCTHLGCIPLPNAGDF
Sbjct:   32 SSPARSPSP-SLTSSFLDQIRGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF 222          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.156e-77
Identity = 153/214 (71.50%), Postives = 174/214 (81.31%), Query Frame = 1
Query:   37 LSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGR--DLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            L+G  + D   D+A        S++SP  F   S      RG S+    + R  D GL +DLPATVAAVKNP  K+VYDE+NHERYPPGD SKRAFAYF+L+GGRF+YASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI+LANSVDVASLR P++D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDF
Sbjct:   26 LAGAGVPDRDDDSARGRSQPRFSIDSP--FFVAS------RGFSSTETVVPRNQDAGL-ADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 230          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.604e-32
Identity = 70/154 (45.45%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  214 LPATVAAVKNPTSKIVYDEHNHERYPPGDASK-RAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            L A+ +  + P    V  E+N       DA K R++AYF++     + ++  +  +  F+ SM+A+ DVLA+A +EV+L++I  G  V VKW+GKPVFIR RT  +IQ ANSVD+++L+DPQ D+ RVK+P+WL+++G+CTHLGC+P+  AGDF
Sbjct:   27 LLASKSTYRTPNFDDVLKENN-------DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDF 173          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 67/128 (52.34%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  289 PPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            PP  ++   F+YF++     + A+  +  I +F+ +MSAS DVLA+A +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V+VA+LRDP+ D+ RVK PEWLV++GVCTHLGC+P+  AGD+
Sbjct:   63 PP--STNMLFSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDY 188          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 1
Query:  265 DEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            D   ++    GD S R  +Y ++     + A+  +  +  F+ S SAS DVLA++  EVDLS I  G  + VKW+GKPVFIR RT E+IQ ANSVD+++LRDPQ DS RV+ PEWLV++GVCTHLGC+P+  AGD+
Sbjct:   52 DFSEYQTKSTGDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDY 186          
The following BLAST results are available for this feature:
BLAST of CX295615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI1_TOBAC2.810e-8573.27Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI2_TOBAC3.670e-8570.80Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI3_TOBAC6.921e-8479.69Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC1.542e-8379.17Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI4_TOBAC2.630e-8382.42Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_SOLTU2.908e-8279.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MAIZE2.156e-7771.50Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST3.604e-3245.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR6.148e-3252.34Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO1.789e-3150.74Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC05074A12SK DroRLeaf1 Citrus clementina cDNA clone C05074A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295615 ID=CX295615; Name=CX295615; organism=Citrus clementina; type=EST; length=673bp
TTACGCTGGAACTTGCAGCAGACAACCTCCGCCTTCCTATCTGGGAACTA
TCTTAATGACGGCGGCTGCGACGCTGCCGCTGCCGCTCAATCTCTCTCCA
GATCCGTCAATTCCCCGCTTCCTTTCTCTTTCACTTCCCACATTCCGCAT
CTCATCAGAGGTTTGTCTGCTGAAGCCCTCAGTCTAGGACGTGATTTGGG
TCTGATCTCAGACCTTCCAGCTACTGTGGCAGCTGTGAAGAACCCAACTT
CAAAAATTGTCTATGATGAGCACAATCATGAGCGTTATCCACCTGGTGAC
GCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGGTTTGT
GTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAGCATGT
CTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACCTATCC
AGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAGCCAGT
TTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAGTGTTG
ATGTAGCGTCACTCCGGGACCCACAGGAAGATTCTGTCAGGGTTAAGAAT
CCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGCATTCC
TTTACCAAATGCTGGTGACTTTG
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